Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_F21
         (945 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    26   0.43 
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   5.3  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   5.3  

>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 26.2 bits (55), Expect = 0.43
 Identities = 18/58 (31%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
 Frame = +2

Query: 647 IPFPXPRXIXFXN-PXXPKIPXX-FXPXXPXNXXRFPPXPPPXXGTPKIFXTXPPXXP 814
           IP P P  I + N P  P  P        P      PP P P    P ++   PP  P
Sbjct: 336 IPVPVPVPIYYGNFPPRPMGPWISMQEQIPRFRYIGPPTPFPRFIPPNVYRFRPPLNP 393


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 17/58 (29%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
 Frame = +2

Query: 647 IPFPXPRXIXFXN-PXXPKIPXX-FXPXXPXNXXRFPPXPPPXXGTPKIFXTXPPXXP 814
           IP P P  +   N P  P  P        P      PP P P    P  +   PP  P
Sbjct: 122 IPVPVPVPVYCGNFPPRPMGPWISMQEQIPRFRYIGPPTPFPRFIPPNAYRLRPPLNP 179


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 17/58 (29%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
 Frame = +2

Query: 647 IPFPXPRXIXFXN-PXXPKIPXX-FXPXXPXNXXRFPPXPPPXXGTPKIFXTXPPXXP 814
           IP P P  +   N P  P  P        P      PP P P    P  +   PP  P
Sbjct: 122 IPVPVPVPVYCGNFPPRPMGPWISMQEQIPRFRYIGPPTPFPRFIPPNAYRLRPPLNP 179


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,748
Number of Sequences: 438
Number of extensions: 3215
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30960384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)