Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_F20
         (1054 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   2.2  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   3.0  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    22   9.0  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   9.0  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 443 PPPPPPP 463
           PPPPPPP
Sbjct: 731 PPPPPPP 737



 Score = 23.8 bits (49), Expect = 2.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 446 PPPPPPP 466
           PPPPPPP
Sbjct: 731 PPPPPPP 737


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 14/46 (30%), Positives = 15/46 (32%)
 Frame = +1

Query: 745 PXPAXAPPXAPPXXPPAXXXPXXPPPXPXXPXPPRXPPAPXAXXPP 882
           P P+   P   P  PP        PP P  P  P  P  P     P
Sbjct: 153 PNPSIIDPG--PALPPTGFLCNNYPPLPQVPPLPLPPIFPPTMINP 196



 Score = 22.6 bits (46), Expect = 5.2
 Identities = 10/30 (33%), Positives = 11/30 (36%)
 Frame = +3

Query: 702 PXXPPPPXXXXPPPXXPRXRPXXRPPXXPP 791
           P  PP        P  P+  P   PP  PP
Sbjct: 162 PALPPTGFLCNNYPPLPQVPPLPLPPIFPP 191


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = +3

Query: 735 PPPXXPRXRPXXRPPXXPPRP 797
           PP   PR     R    PPRP
Sbjct: 250 PPTPKPRPTKVSRRKPRPPRP 270


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +2

Query: 1013 PXPXPPXPXPPP 1048
            P P P  P PPP
Sbjct: 205  PEPVPSTPYPPP 216


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.315    0.148    0.515 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,084
Number of Sequences: 336
Number of extensions: 2896
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 30104324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)