Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_F19
         (1061 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0672 - 10325935-10326150,10326308-10326400,10326568-103267...    41   0.002
01_06_1209 + 35427160-35427318,35427436-35427501,35427737-354278...    37   0.031

>03_02_0672 -
           10325935-10326150,10326308-10326400,10326568-10326708,
           10326828-10326893,10327099-10327359
          Length = 258

 Score = 40.7 bits (91), Expect = 0.002
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +2

Query: 302 SLCPGCRVFDSEILXPTI-ERLNQYLNINIYPYGKAQTIEKNGKYEFICQHGPEECYGNK 478
           SLCP   +F    L     + L   +++++ PYG A+   K+GK     +HG EEC+ N 
Sbjct: 40  SLCPYSAMFVVGSLAKVFRDGLLDAVDLSLVPYGNARV--KDGKISCQVEHGSEECFLNT 97

Query: 479 LHACA 493
           + ACA
Sbjct: 98  VEACA 102


>01_06_1209 +
           35427160-35427318,35427436-35427501,35427737-35427877,
           35428342-35428434,35428530-35428646,35428890-35429054
          Length = 246

 Score = 36.7 bits (81), Expect = 0.031
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +2

Query: 302 SLCPGCRVFDSEILXPTI-ERLNQYLNINIYPYGKAQTIEKNGKYEFICQHGPEECYGNK 478
           +LCP C  F    L     + L+  +++ + P+G  + +  +G     CQHG EEC  N 
Sbjct: 7   TLCPFCSGFVVNDLARIFRDGLSPVVDLRLVPFGNGR-VSPDGS--ITCQHGEEECQLNA 63

Query: 479 LHACASTL 502
           + AC   L
Sbjct: 64  IEACVIRL 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,198,902
Number of Sequences: 37544
Number of extensions: 211094
Number of successful extensions: 362
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3152842920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)