Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_F19
         (1061 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54785| Best HMM Match : No HMM Matches (HMM E-Value=.)              63   4e-10
SB_11216| Best HMM Match : GILT (HMM E-Value=6.7e-10)                  46   5e-05
SB_25324| Best HMM Match : FtsH_ext (HMM E-Value=5.9)                  29   4.8  
SB_26474| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  

>SB_54785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 211

 Score = 62.9 bits (146), Expect = 4e-10
 Identities = 26/64 (40%), Positives = 36/64 (56%)
 Frame = +2

Query: 302 SLCPGCRVFDSEILXPTIERLNQYLNINIYPYGKAQTIEKNGKYEFICQHGPEECYGNKL 481
           S+C GCR    + L PT +++   ++I + PYG AQ      K+ F CQHG  EC GN +
Sbjct: 35  SMCGGCRDMIRDQLYPTFQKVGSIMDITLVPYGNAQEYRYGNKWVFNCQHGQGECEGNII 94

Query: 482 HACA 493
             CA
Sbjct: 95  EVCA 98


>SB_11216| Best HMM Match : GILT (HMM E-Value=6.7e-10)
          Length = 311

 Score = 46.0 bits (104), Expect = 5e-05
 Identities = 21/66 (31%), Positives = 34/66 (51%)
 Frame = +2

Query: 311 PGCRVFDSEILXPTIERLNQYLNINIYPYGKAQTIEKNGKYEFICQHGPEECYGNKLHAC 490
           P  R F    L PT  ++   L+I++ P+G  + I+    +++ C +G EEC  N + AC
Sbjct: 39  PEFRRFMVAQLYPTSNKIPNILDISMVPFGDGKEIKAKSGFQYYCTNGAEECLENLIQAC 98

Query: 491 ASTLGN 508
           A    N
Sbjct: 99  AVATEN 104


>SB_25324| Best HMM Match : FtsH_ext (HMM E-Value=5.9)
          Length = 201

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = -3

Query: 216 LDRV*SISIKFETIYSSCPLTKTIKYRTTNIVLDIVFILV 97
           L+ V +I  + E I   C  TKTI   TTNI++ I+ I++
Sbjct: 55  LEIVGNIKKQKEEINKVCLTTKTIGVITTNIIIIIIIIII 94


>SB_26474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +2

Query: 317 CRVFDSEILXPTIERLNQYLNINIYPYGKAQTIEKNGKY--EFICQH 451
           CR+F++  L  TIE  N Y    I PY + Q + +   +  E+ CQ+
Sbjct: 79  CRIFNNNGLRITIEANNTYQPF-IKPYAQLQYVHRQSNHHKEYPCQY 124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,906,210
Number of Sequences: 59808
Number of extensions: 271918
Number of successful extensions: 787
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 16,821,457
effective HSP length: 83
effective length of database: 11,857,393
effective search space used: 3201496110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)