Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_F19
         (1061 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g12870.1 68417.m02015 gamma interferon responsive lysosomal t...    48   1e-05
At4g12960.1 68417.m02025 gamma interferon responsive lysosomal t...    46   3e-05
At5g01580.1 68418.m00073 gamma interferon responsive lysosomal t...    42   0.001
At4g12900.1 68417.m02018 gamma interferon responsive lysosomal t...    40   0.002
At4g12890.1 68417.m02017 gamma interferon responsive lysosomal t...    40   0.004
At1g07080.1 68414.m00754 gamma interferon responsive lysosomal t...    37   0.026
At3g04340.1 68416.m00459 FtsH protease family protein similar to...    29   3.9  

>At4g12870.1 68417.m02015 gamma interferon responsive lysosomal
           thiol reductase family protein / GILT family protein
           similar to SP|P13284 Gamma-interferon inducible
           lysosomal thiol reductase precursor {Homo sapiens};
           contains Pfam profile PF03227: Gamma interferon
           inducible lysosomal thiol reductase (GILT)
          Length = 229

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
 Frame = +2

Query: 302 SLCPGCRVFDSEILXPTIER-LNQYLNINIYPYGKAQTIEKNGKYEFICQHGPEECYGNK 478
           SLCPGC+ F  + L    +  L+   ++ + P+G A+    +     ICQHG EEC  N 
Sbjct: 41  SLCPGCQSFIVDELVKVFDSDLDTITDVKLVPFGYAKV---SNNLTVICQHGEEECKLNA 97

Query: 479 LHACA-STLGN 508
           L AC  +TL N
Sbjct: 98  LEACVINTLPN 108


>At4g12960.1 68417.m02025 gamma interferon responsive lysosomal
           thiol reductase family protein / GILT family protein
           similar to SP|P13284 Gamma-interferon inducible
           lysosomal thiol reductase precursor {Homo sapiens};
           contains Pfam profile PF03227: Gamma interferon
           inducible lysosomal thiol reductase (GILT)
          Length = 233

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +2

Query: 302 SLCPGCRVFDSEILXPTIER-LNQYLNINIYPYGKAQTIEKNGKYEFICQHGPEECYGNK 478
           SLCPGC+ F  + L    +  L    ++ ++P+G A   E +      CQHG EEC  N 
Sbjct: 40  SLCPGCQEFIVDDLGKIFDYDLYTITDLKLFPFGNA---ELSDNLTVTCQHGEEECKLNA 96

Query: 479 LHACA 493
           L ACA
Sbjct: 97  LEACA 101


>At5g01580.1 68418.m00073 gamma interferon responsive lysosomal
           thiol reductase family protein / GILT family protein
           similar to SP|P13284 Gamma-interferon inducible
           lysosomal thiol reductase precursor {Homo sapiens};
           contains Pfam profile PF03227: Gamma interferon
           inducible lysosomal thiol reductase (GILT)
          Length = 233

 Score = 41.5 bits (93), Expect = 0.001
 Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +2

Query: 302 SLCPGCRVFDSEILXPTIER-LNQYLNINIYPYGKAQTIEKNGKYEFICQHGPEECYGNK 478
           +LCP C  F    L    E  L   +++ + P+G A  I  +G    +CQHG  EC  N 
Sbjct: 35  ALCPFCAEFIVNRLPKIFETGLISSIDLQLVPWGNA-AIRPDGT--ILCQHGEAECALNA 91

Query: 479 LHACA 493
           +HACA
Sbjct: 92  IHACA 96


>At4g12900.1 68417.m02018 gamma interferon responsive lysosomal
           thiol reductase family protein / GILT family protein
           similar to SP|P13284 Gamma-interferon inducible
           lysosomal thiol reductase precursor {Homo sapiens};
           contains Pfam profile PF03227: Gamma interferon
           inducible lysosomal thiol reductase (GILT)
          Length = 231

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +2

Query: 302 SLCPGCRVFDSEILXPTIER-LNQYLNINIYPYGKAQTIEKNGKYEFICQHGPEECYGNK 478
           SLCP C+ F    L       L+   ++ + P+G A   +        CQHG EEC  N 
Sbjct: 45  SLCPSCQNFIVHHLGKIFNTDLHTITDLKLIPFGNAHVSDD---LTVTCQHGEEECKLNA 101

Query: 479 LHACA 493
           L ACA
Sbjct: 102 LEACA 106


>At4g12890.1 68417.m02017 gamma interferon responsive lysosomal
           thiol reductase family protein / GILT family protein
           similar to SP|P13284 Gamma-interferon inducible
           lysosomal thiol reductase precursor {Homo sapiens};
           contains Pfam profile PF03227: Gamma interferon
           inducible lysosomal thiol reductase (GILT)
          Length = 232

 Score = 39.5 bits (88), Expect = 0.004
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +2

Query: 302 SLCPGCRVFDSEILXPTIER-LNQYLNINIYPYGKAQTIEKNGKYEFICQHGPEECYGNK 478
           SLCP C+ F  + L    +  L +  ++ + P+G A  I  N      CQHG EEC  N 
Sbjct: 47  SLCPYCQNFIVDDLGKIFDSDLLKITDLKLVPFGNAH-ISNN--LTITCQHGEEECKLNA 103

Query: 479 LHAC 490
           L AC
Sbjct: 104 LEAC 107


>At1g07080.1 68414.m00754 gamma interferon responsive lysosomal
           thiol reductase family protein / GILT family protein
           similar to SP|P13284 Gamma-interferon inducible
           lysosomal thiol reductase precursor {Homo sapiens};
           contains Pfam profile PF03227: Gamma interferon
           inducible lysosomal thiol reductase (GILT)
          Length = 265

 Score = 36.7 bits (81), Expect = 0.026
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +2

Query: 302 SLCPGCRVFDSEILXPTIER-LNQYLNINIYPYGKAQTIEKNGKYEFICQHGPEECYGNK 478
           SLCP C  F    L    E  L   +++++ P+G  +    N     +CQHG  EC+ + 
Sbjct: 47  SLCPYCSSFIVNHLAKLFEDDLISIVDLHLSPWGNTKLRSDN--VTAVCQHGAFECFLDT 104

Query: 479 LHACA 493
           + ACA
Sbjct: 105 VEACA 109


>At3g04340.1 68416.m00459 FtsH protease family protein similar to
           chloroplast FtsH protease [Arabidopsis thaliana]
           GI:1483215; contains Pfam profiles PF01434: Peptidase
           family M41, PF00004: ATPase AAA family
          Length = 960

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 385 YLPLRKSPDHRKEW*VRVYLPTRSRRVLREQ 477
           Y P R+ P+ RK W V+ Y   R RR+ +++
Sbjct: 369 YGPFRRDPNVRKFWRVKSYFTYRKRRIKQKR 399


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,300,873
Number of Sequences: 28952
Number of extensions: 186776
Number of successful extensions: 360
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 12,070,560
effective HSP length: 82
effective length of database: 9,696,496
effective search space used: 2627750416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)