Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_F18
         (1013 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)                   32   0.85 
SB_4771| Best HMM Match : DEAD (HMM E-Value=0.015)                     31   1.5  
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.0  
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)                     30   2.6  
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)              30   2.6  

>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
          Length = 514

 Score = 31.9 bits (69), Expect = 0.85
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +2

Query: 896  PPSPTXAXHNLSPPXHARSFSLXPPPTRXXXPHPSPG 1006
            PP P        PP  +RS    PPP+R   P PS G
Sbjct: 316  PPPPARMGTAPPPPPPSRSSQRPPPPSRGAPPPPSMG 352


>SB_4771| Best HMM Match : DEAD (HMM E-Value=0.015)
          Length = 592

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 896  PPSPTXAXHNLSPPXHARSFSLXPPPTRXXXPHPSPG 1006
            PP+P    +N+ PP H       PP +    P P+PG
Sbjct: 70   PPAPQPVPNNMGPPPHVNQG--PPPNSANQAPPPNPG 104


>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = +2

Query: 884  PLXXPPSPTXAXHNLSPPXHARSFSLXPPPTRXXXPHPSP 1003
            P   PPSP    +N  PP    +    PPP     P P P
Sbjct: 350  PTNNPPSPPPPTNNTPPPPPPTNKPPPPPPPTNGPPPPPP 389


>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
          Length = 480

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 932  PPXHARSFSLXPPPTRXXXPHPSP 1003
            PP H+R  S  PPP R   P P P
Sbjct: 196  PPPHSRHGSAPPPPERSSGPPPPP 219


>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
          Length = 392

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 932  PPXHARSFSLXPPPTRXXXPHPSP 1003
            PP H+R  S  PPP R   P P P
Sbjct: 108  PPPHSRHGSAPPPPERSSGPPPPP 131


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,742,014
Number of Sequences: 59808
Number of extensions: 284289
Number of successful extensions: 856
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 16,821,457
effective HSP length: 83
effective length of database: 11,857,393
effective search space used: 3011777822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)