Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_F18
(1013 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY388963-1|AAR26468.1| 837|Homo sapiens protocadherin 15 isofor... 35 0.54
AY029237-1|AAK31804.1| 1955|Homo sapiens protocadherin 15 protein. 35 0.54
AY029205-1|AAK31581.1| 1955|Homo sapiens protocadherin 15 protein. 35 0.54
AL365496-11|CAH73917.1| 837|Homo sapiens protocadherin 15 protein. 35 0.54
AL365496-10|CAM19874.1| 1957|Homo sapiens protocadherin 15 protein. 35 0.54
AL365496-9|CAM19873.1| 1952|Homo sapiens protocadherin 15 protein. 35 0.54
AL365496-8|CAM19872.1| 1932|Homo sapiens protocadherin 15 protein. 35 0.54
AL365496-7|CAH73916.1| 1955|Homo sapiens protocadherin 15 protein. 35 0.54
AL360214-13|CAM21542.1| 1957|Homo sapiens protocadherin 15 protein. 35 0.54
AL360214-12|CAM21543.1| 1952|Homo sapiens protocadherin 15 protein. 35 0.54
AL360214-11|CAM21544.1| 1932|Homo sapiens protocadherin 15 protein. 35 0.54
AL360214-10|CAI15201.1| 1955|Homo sapiens protocadherin 15 protein. 35 0.54
AL356114-13|CAM15124.1| 1957|Homo sapiens protocadherin 15 protein. 35 0.54
AL356114-12|CAM15123.1| 1952|Homo sapiens protocadherin 15 protein. 35 0.54
AL356114-11|CAM15125.1| 1932|Homo sapiens protocadherin 15 protein. 35 0.54
AL356114-10|CAH71769.1| 1955|Homo sapiens protocadherin 15 protein. 35 0.54
AL353784-11|CAM16792.1| 1957|Homo sapiens protocadherin 15 protein. 35 0.54
AL353784-10|CAM16791.1| 1952|Homo sapiens protocadherin 15 protein. 35 0.54
AL353784-9|CAH72390.1| 1955|Homo sapiens protocadherin 15 protein. 35 0.54
>AY388963-1|AAR26468.1| 837|Homo sapiens protocadherin 15 isoform B
protein.
Length = 837
Score = 34.7 bits (76), Expect = 0.54
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 869 PXAXXPLXXPPSPTXAXHNLSPPXHARSFSL-XPPPTRXXXPHPSP 1003
P P PPSP A L+PP FSL PPP+ P P P
Sbjct: 628 PLPPPPPISPPSPPPAPAPLAPPPDISPFSLFCPPPSPPSIPLPLP 673
>AY029237-1|AAK31804.1| 1955|Homo sapiens protocadherin 15 protein.
Length = 1955
Score = 34.7 bits (76), Expect = 0.54
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 869 PXAXXPLXXPPSPTXAXHNLSPPXHARSFSL-XPPPTRXXXPHPSP 1003
P P PPSP A L+PP FSL PPP+ P P P
Sbjct: 1746 PLPPPPPISPPSPPPAPAPLAPPPDISPFSLFCPPPSPPSIPLPLP 1791
>AY029205-1|AAK31581.1| 1955|Homo sapiens protocadherin 15 protein.
Length = 1955
Score = 34.7 bits (76), Expect = 0.54
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 869 PXAXXPLXXPPSPTXAXHNLSPPXHARSFSL-XPPPTRXXXPHPSP 1003
P P PPSP A L+PP FSL PPP+ P P P
Sbjct: 1746 PLPPPPPISPPSPPPAPAPLAPPPDISPFSLFCPPPSPPSIPLPLP 1791
>AL365496-11|CAH73917.1| 837|Homo sapiens protocadherin 15 protein.
Length = 837
Score = 34.7 bits (76), Expect = 0.54
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 869 PXAXXPLXXPPSPTXAXHNLSPPXHARSFSL-XPPPTRXXXPHPSP 1003
P P PPSP A L+PP FSL PPP+ P P P
Sbjct: 628 PLPPPPPISPPSPPPAPAPLAPPPDISPFSLFCPPPSPPSIPLPLP 673
>AL365496-10|CAM19874.1| 1957|Homo sapiens protocadherin 15 protein.
Length = 1957
Score = 34.7 bits (76), Expect = 0.54
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 869 PXAXXPLXXPPSPTXAXHNLSPPXHARSFSL-XPPPTRXXXPHPSP 1003
P P PPSP A L+PP FSL PPP+ P P P
Sbjct: 1748 PLPPPPPISPPSPPPAPAPLAPPPDISPFSLFCPPPSPPSIPLPLP 1793
>AL365496-9|CAM19873.1| 1952|Homo sapiens protocadherin 15 protein.
Length = 1952
Score = 34.7 bits (76), Expect = 0.54
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 869 PXAXXPLXXPPSPTXAXHNLSPPXHARSFSL-XPPPTRXXXPHPSP 1003
P P PPSP A L+PP FSL PPP+ P P P
Sbjct: 1743 PLPPPPPISPPSPPPAPAPLAPPPDISPFSLFCPPPSPPSIPLPLP 1788
>AL365496-8|CAM19872.1| 1932|Homo sapiens protocadherin 15 protein.
Length = 1932
Score = 34.7 bits (76), Expect = 0.54
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 869 PXAXXPLXXPPSPTXAXHNLSPPXHARSFSL-XPPPTRXXXPHPSP 1003
P P PPSP A L+PP FSL PPP+ P P P
Sbjct: 1723 PLPPPPPISPPSPPPAPAPLAPPPDISPFSLFCPPPSPPSIPLPLP 1768
>AL365496-7|CAH73916.1| 1955|Homo sapiens protocadherin 15 protein.
Length = 1955
Score = 34.7 bits (76), Expect = 0.54
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 869 PXAXXPLXXPPSPTXAXHNLSPPXHARSFSL-XPPPTRXXXPHPSP 1003
P P PPSP A L+PP FSL PPP+ P P P
Sbjct: 1746 PLPPPPPISPPSPPPAPAPLAPPPDISPFSLFCPPPSPPSIPLPLP 1791
>AL360214-13|CAM21542.1| 1957|Homo sapiens protocadherin 15 protein.
Length = 1957
Score = 34.7 bits (76), Expect = 0.54
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 869 PXAXXPLXXPPSPTXAXHNLSPPXHARSFSL-XPPPTRXXXPHPSP 1003
P P PPSP A L+PP FSL PPP+ P P P
Sbjct: 1748 PLPPPPPISPPSPPPAPAPLAPPPDISPFSLFCPPPSPPSIPLPLP 1793
>AL360214-12|CAM21543.1| 1952|Homo sapiens protocadherin 15 protein.
Length = 1952
Score = 34.7 bits (76), Expect = 0.54
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 869 PXAXXPLXXPPSPTXAXHNLSPPXHARSFSL-XPPPTRXXXPHPSP 1003
P P PPSP A L+PP FSL PPP+ P P P
Sbjct: 1743 PLPPPPPISPPSPPPAPAPLAPPPDISPFSLFCPPPSPPSIPLPLP 1788
>AL360214-11|CAM21544.1| 1932|Homo sapiens protocadherin 15 protein.
Length = 1932
Score = 34.7 bits (76), Expect = 0.54
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 869 PXAXXPLXXPPSPTXAXHNLSPPXHARSFSL-XPPPTRXXXPHPSP 1003
P P PPSP A L+PP FSL PPP+ P P P
Sbjct: 1723 PLPPPPPISPPSPPPAPAPLAPPPDISPFSLFCPPPSPPSIPLPLP 1768
>AL360214-10|CAI15201.1| 1955|Homo sapiens protocadherin 15 protein.
Length = 1955
Score = 34.7 bits (76), Expect = 0.54
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 869 PXAXXPLXXPPSPTXAXHNLSPPXHARSFSL-XPPPTRXXXPHPSP 1003
P P PPSP A L+PP FSL PPP+ P P P
Sbjct: 1746 PLPPPPPISPPSPPPAPAPLAPPPDISPFSLFCPPPSPPSIPLPLP 1791
>AL356114-13|CAM15124.1| 1957|Homo sapiens protocadherin 15 protein.
Length = 1957
Score = 34.7 bits (76), Expect = 0.54
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 869 PXAXXPLXXPPSPTXAXHNLSPPXHARSFSL-XPPPTRXXXPHPSP 1003
P P PPSP A L+PP FSL PPP+ P P P
Sbjct: 1748 PLPPPPPISPPSPPPAPAPLAPPPDISPFSLFCPPPSPPSIPLPLP 1793
>AL356114-12|CAM15123.1| 1952|Homo sapiens protocadherin 15 protein.
Length = 1952
Score = 34.7 bits (76), Expect = 0.54
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 869 PXAXXPLXXPPSPTXAXHNLSPPXHARSFSL-XPPPTRXXXPHPSP 1003
P P PPSP A L+PP FSL PPP+ P P P
Sbjct: 1743 PLPPPPPISPPSPPPAPAPLAPPPDISPFSLFCPPPSPPSIPLPLP 1788
>AL356114-11|CAM15125.1| 1932|Homo sapiens protocadherin 15 protein.
Length = 1932
Score = 34.7 bits (76), Expect = 0.54
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 869 PXAXXPLXXPPSPTXAXHNLSPPXHARSFSL-XPPPTRXXXPHPSP 1003
P P PPSP A L+PP FSL PPP+ P P P
Sbjct: 1723 PLPPPPPISPPSPPPAPAPLAPPPDISPFSLFCPPPSPPSIPLPLP 1768
>AL356114-10|CAH71769.1| 1955|Homo sapiens protocadherin 15 protein.
Length = 1955
Score = 34.7 bits (76), Expect = 0.54
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 869 PXAXXPLXXPPSPTXAXHNLSPPXHARSFSL-XPPPTRXXXPHPSP 1003
P P PPSP A L+PP FSL PPP+ P P P
Sbjct: 1746 PLPPPPPISPPSPPPAPAPLAPPPDISPFSLFCPPPSPPSIPLPLP 1791
>AL353784-11|CAM16792.1| 1957|Homo sapiens protocadherin 15 protein.
Length = 1957
Score = 34.7 bits (76), Expect = 0.54
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 869 PXAXXPLXXPPSPTXAXHNLSPPXHARSFSL-XPPPTRXXXPHPSP 1003
P P PPSP A L+PP FSL PPP+ P P P
Sbjct: 1748 PLPPPPPISPPSPPPAPAPLAPPPDISPFSLFCPPPSPPSIPLPLP 1793
>AL353784-10|CAM16791.1| 1952|Homo sapiens protocadherin 15 protein.
Length = 1952
Score = 34.7 bits (76), Expect = 0.54
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 869 PXAXXPLXXPPSPTXAXHNLSPPXHARSFSL-XPPPTRXXXPHPSP 1003
P P PPSP A L+PP FSL PPP+ P P P
Sbjct: 1743 PLPPPPPISPPSPPPAPAPLAPPPDISPFSLFCPPPSPPSIPLPLP 1788
>AL353784-9|CAH72390.1| 1955|Homo sapiens protocadherin 15 protein.
Length = 1955
Score = 34.7 bits (76), Expect = 0.54
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 869 PXAXXPLXXPPSPTXAXHNLSPPXHARSFSL-XPPPTRXXXPHPSP 1003
P P PPSP A L+PP FSL PPP+ P P P
Sbjct: 1746 PLPPPPPISPPSPPPAPAPLAPPPDISPFSLFCPPPSPPSIPLPLP 1791
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,014,394
Number of Sequences: 237096
Number of extensions: 1566766
Number of successful extensions: 5360
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 4612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5299
length of database: 76,859,062
effective HSP length: 91
effective length of database: 55,283,326
effective search space used: 13599698196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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