Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_F18
         (1013 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical pr...    30   2.3  
AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical ...    29   7.0  

>Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical
           protein C56A3.1 protein.
          Length = 393

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 17/51 (33%), Positives = 17/51 (33%)
 Frame = -2

Query: 805 CPXXXXVXXXVGGGGARGGXXXXXXXXXXXXXXXXXGGFVGXGGGGXXXVG 653
           CP    V    GGGG  GG                 GG  G GGGG    G
Sbjct: 75  CPQVQPVYVQSGGGGCGGGGCGGGGGGCGGGGGCGGGGGGGCGGGGGGGCG 125


>AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical
            protein Y40B1A.5 protein.
          Length = 134

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 14/45 (31%), Positives = 16/45 (35%)
 Frame = +2

Query: 869  PXAXXPLXXPPSPTXAXHNLSPPXHARSFSLXPPPTRXXXPHPSP 1003
            P +  P   PP P        PP H +     PPP     P P P
Sbjct: 56   PPSLPPSTMPPGPHGMPFMGGPPPHHQYHLQYPPPHGLGPPPPPP 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,047,025
Number of Sequences: 27780
Number of extensions: 235146
Number of successful extensions: 700
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2667870690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)