Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_F18
(1013 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g19320.1 68416.m02450 leucine-rich repeat family protein cont... 32 0.53
At5g23150.1 68418.m02707 PWWP domain-containing protein identica... 32 0.70
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex... 30 2.1
At5g46730.1 68418.m05757 glycine-rich protein 30 2.8
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 30 2.8
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 30 2.8
At3g01650.1 68416.m00096 copine-related low similarity to SP|Q99... 30 2.8
At2g27380.1 68415.m03302 proline-rich family protein contains pr... 30 2.8
At5g48920.1 68418.m06052 hydroxyproline-rich glycoprotein family... 29 4.9
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 29 4.9
At4g34440.1 68417.m04894 protein kinase family protein contains ... 29 6.5
At3g24550.1 68416.m03083 protein kinase family protein contains ... 28 8.6
>At3g19320.1 68416.m02450 leucine-rich repeat family protein contains
leucine-rich repeats, Pfam:PF00560;
Length = 493
Score = 32.3 bits (70), Expect = 0.53
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +2
Query: 896 PPSPTXAXHNLSPPXHARSFSLXPPPTRXXXPHPSP 1003
PPSP+ + PP + + PPP R P P P
Sbjct: 80 PPSPSPEPEHYPPPPYHHYITPSPPPPRPLPPPPPP 115
>At5g23150.1 68418.m02707 PWWP domain-containing protein identical to
cDNA putative transcription factor (HUA2) GI:4868119;
contains Pfam profile PF00855: PWWP domain
Length = 1392
Score = 31.9 bits (69), Expect = 0.70
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 884 PLXXPPSPTXAXHNLSPPXHARSFS-LXPPPTRXXXPHPSP 1003
P PPSP +L PP A F L PPP++ P SP
Sbjct: 1077 PSPPPPSPPLPPSSLPPPPPAALFPPLPPPPSQPPPPPLSP 1117
>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 699
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +2
Query: 884 PLXXPPSPTXAXHNLSPPXHARSFSLXPPPTRXXXPHPSP 1003
P+ PP P H+ PP H S PPP P P P
Sbjct: 529 PVYSPPPPPPPVHSPPPPVH----SPPPPPVYSPPPPPPP 564
>At5g46730.1 68418.m05757 glycine-rich protein
Length = 290
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = -2
Query: 772 GGGGARGGXXXXXXXXXXXXXXXXXGGFVGXGGGG 668
GGGGA GG GG+ G GGGG
Sbjct: 224 GGGGAHGGGYGSGGGEGGGYGGGAAGGYGGGGGGG 258
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +2
Query: 896 PPSPTXAXHNLSPPXHARSFSLXPPPTRXXXPHPSP 1003
PPSP +N PP A +S PPP P P
Sbjct: 780 PPSPPVYYYNSPPPPPAVHYSPPPPPVIHHSQPPPP 815
>At3g19430.1 68416.m02464 late embryogenesis abundant protein-related
/ LEA protein-related similar to late embryogenesis
abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 896 PPSPTXAXHNLSPPXHARSFSLXPPPTRXXXPHPSP 1003
PP+PT + + +PP PPP P P+P
Sbjct: 155 PPTPTPSVPSPTPPVPTDPMPSPPPPVSPPPPTPTP 190
>At3g01650.1 68416.m00096 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 489
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +2
Query: 896 PPSPTXAXHNLSPPXHARSFSLXPPPTRXXXPHPSP 1003
P S + A H P S++ PPPT P P+P
Sbjct: 13 PSSSSWASHQSYPQYGPDSYNYPPPPTYAPAPSPAP 48
>At2g27380.1 68415.m03302 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 761
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/45 (28%), Positives = 18/45 (40%)
Frame = +2
Query: 869 PXAXXPLXXPPSPTXAXHNLSPPXHARSFSLXPPPTRXXXPHPSP 1003
P P+ PP+PT + PP H + PP + H P
Sbjct: 216 PIKPPPVHKPPTPTYSPPVKPPPVHKPPTPIYSPPIKPPPVHKPP 260
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/45 (28%), Positives = 17/45 (37%)
Frame = +2
Query: 869 PXAXXPLXXPPSPTXAXHNLSPPXHARSFSLXPPPTRXXXPHPSP 1003
P P+ PP+PT + PP H PP + H P
Sbjct: 552 PIKPPPIHKPPTPTYSPPIKPPPVHKPPTPTYSPPIKPPPVHKPP 596
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/45 (28%), Positives = 17/45 (37%)
Frame = +2
Query: 869 PXAXXPLXXPPSPTXAXHNLSPPXHARSFSLXPPPTRXXXPHPSP 1003
P P+ PP+PT + PP H PP + H P
Sbjct: 535 PIKPPPVHKPPTPTYSPPIKPPPIHKPPTPTYSPPIKPPPVHKPP 579
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/45 (28%), Positives = 17/45 (37%)
Frame = +2
Query: 869 PXAXXPLXXPPSPTXAXHNLSPPXHARSFSLXPPPTRXXXPHPSP 1003
P P+ PP+PT + PP H PP + H P
Sbjct: 569 PIKPPPVHKPPTPTYSPPIKPPPVHKPPTPTYSPPIKPPPVHKPP 613
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/45 (28%), Positives = 17/45 (37%)
Frame = +2
Query: 869 PXAXXPLXXPPSPTXAXHNLSPPXHARSFSLXPPPTRXXXPHPSP 1003
P P+ PP+PT + PP H PP + H P
Sbjct: 586 PIKPPPVHKPPTPTYSPPIKPPPVHKPPTPTYSPPIKPPPVHKPP 630
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/45 (28%), Positives = 17/45 (37%)
Frame = +2
Query: 869 PXAXXPLXXPPSPTXAXHNLSPPXHARSFSLXPPPTRXXXPHPSP 1003
P P+ PP+PT + PP H PP + H P
Sbjct: 603 PIKPPPVHKPPTPTYSPPIKPPPVHKPPTPTYSPPIKPPPVHKPP 647
>At5g48920.1 68418.m06052 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 205
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = +2
Query: 869 PXAXXPLXXPPSPTXAXHNLSPPXHARSFSLXPPPTRXXXPHPSP 1003
P + PP P H+ PP + PPP+ PHP P
Sbjct: 25 PPPPSHISPPPPPFSPPHHPPPPHFSPPHQ--PPPSPYPHPHPPP 67
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = +2
Query: 863 HXPXAXXPLXXPPSPTXAXHNLSPPXHARSFSLXPPPTRXXXPHPSP 1003
H P P+ PP P SPP +S PPP P P P
Sbjct: 499 HSPPPPSPIHSPPPPPV----YSPPPPPPVYSPPPPPPVYSPPPPPP 541
>At4g34440.1 68417.m04894 protein kinase family protein contains Pfam
domain, PF00069: Protein kinase domain
Length = 670
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 884 PLXXPPSPTXAXHNLSPPXHARSFSLXP-PPTRXXXPHPSP 1003
P P SP + + PP + SFS P PPT+ P SP
Sbjct: 32 PPTPPSSPPPSSISAPPPDISASFSPPPAPPTQETSPPTSP 72
>At3g24550.1 68416.m03083 protein kinase family protein contains Pfam
domain PF00069: Protein kinase domain
Length = 652
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +2
Query: 884 PLXXPPSPTXAXHNLSPPXHARSFSLXPPPTRXXXPHPSP 1003
P PPSP +PP A S PP T P PSP
Sbjct: 11 PSPSPPSPPTNSTTTTPPPAASS---PPPTTTPSSPPPSP 47
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,303,981
Number of Sequences: 28952
Number of extensions: 230227
Number of successful extensions: 1031
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2489714688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -