Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_F17
         (1053 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative methopren...    22   2.4  
AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    24   6.6  

>DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative
           methoprene-tolerant protein protein.
          Length = 1115

 Score = 22.2 bits (45), Expect(2) = 2.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 517 GXPPXPXPPP 546
           G PP P PPP
Sbjct: 781 GSPPPPPPPP 790



 Score = 21.4 bits (43), Expect(2) = 2.4
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 523 PPXPXPPPAXXXXG 564
           PP P PPP+    G
Sbjct: 784 PPPPPPPPSSLSPG 797


>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
            topoisomerase protein.
          Length = 1039

 Score = 24.2 bits (50), Expect = 6.6
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = +1

Query: 460  GEXKXKKKKIXGXGERXNXGXPPXPXPPPAXXXXGXG 570
            G    K+KK    GE+ + G P     PP+      G
Sbjct: 981  GTNSSKRKKTVSPGEKKDRGGPMAAGGPPSATAISYG 1017


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 317,337
Number of Sequences: 2352
Number of extensions: 4361
Number of successful extensions: 15
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 65
effective length of database: 411,099
effective search space used: 117163215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)