Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_F17
         (1053 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58748-9|AAB52969.3|  542|Caenorhabditis elegans Hypothetical pr...    31   1.8  
U58748-8|AAM97986.1|  497|Caenorhabditis elegans Hypothetical pr...    31   1.8  
U58748-7|AAM97987.1|  399|Caenorhabditis elegans Hypothetical pr...    31   1.8  
AF003148-5|AAB54209.3|  792|Caenorhabditis elegans Hypothetical ...    29   5.6  
AF068713-14|AAK73895.1|  172|Caenorhabditis elegans Ground-like ...    28   9.7  

>U58748-9|AAB52969.3|  542|Caenorhabditis elegans Hypothetical
           protein ZK180.5a protein.
          Length = 542

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 517 GXPPXPXPPPAXXXXGXGSGY*G 585
           G PP P PPPA    G G+ Y G
Sbjct: 63  GAPPPPPPPPAFGGLGGGAAYPG 85


>U58748-8|AAM97986.1|  497|Caenorhabditis elegans Hypothetical
           protein ZK180.5b protein.
          Length = 497

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 517 GXPPXPXPPPAXXXXGXGSGY*G 585
           G PP P PPPA    G G+ Y G
Sbjct: 63  GAPPPPPPPPAFGGLGGGAAYPG 85


>U58748-7|AAM97987.1|  399|Caenorhabditis elegans Hypothetical
           protein ZK180.5c protein.
          Length = 399

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 517 GXPPXPXPPPAXXXXGXGSGY*G 585
           G PP P PPPA    G G+ Y G
Sbjct: 63  GAPPPPPPPPAFGGLGGGAAYPG 85


>AF003148-5|AAB54209.3|  792|Caenorhabditis elegans Hypothetical
            protein F32B5.7 protein.
          Length = 792

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -3

Query: 1051 ACGAXGGCXGLXGLGXAG 998
            ACGA GGC G  G G  G
Sbjct: 772  ACGACGGCGGCGGCGGCG 789


>AF068713-14|AAK73895.1|  172|Caenorhabditis elegans Ground-like
           (grd related) protein29 protein.
          Length = 172

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 495 FXGAXEXGXPPSPXPPPRXGXG 560
           + G    G PP P PPP+ G G
Sbjct: 57  YGGGYGCGIPPPPPPPPQCGCG 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,453,487
Number of Sequences: 27780
Number of extensions: 135982
Number of successful extensions: 618
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2803879784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)