Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_F16
         (898 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2; ...    38   0.35 
UniRef50_Q0BU79 Cluster: Hypothetical cytosolic protein; n=1; Gr...    34   5.7  
UniRef50_Q7RWH7 Cluster: Putative uncharacterized protein NCU014...    33   9.9  

>UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2;
           Bombycoidea|Rep: Putative uncharacterized protein -
           Lonomia obliqua (Moth)
          Length = 74

 Score = 37.9 bits (84), Expect = 0.35
 Identities = 18/38 (47%), Positives = 20/38 (52%)
 Frame = +1

Query: 250 IYGTGGLLTPLVAPVLXXXXXXXXXXXXXXXXXXYYGN 363
           IYGTGGLLTP+VAP+L                  YYGN
Sbjct: 17  IYGTGGLLTPIVAPMLGFGSAGIAAGSTAAAAQAYYGN 54



 Score = 36.7 bits (81), Expect = 0.80
 Identities = 15/20 (75%), Positives = 20/20 (100%)
 Frame = +3

Query: 363 LVAGSIVSQLTAAAMVAPTP 422
           +VAGS++SQLT+AAM+APTP
Sbjct: 55  VVAGSVISQLTSAAMLAPTP 74


>UniRef50_Q0BU79 Cluster: Hypothetical cytosolic protein; n=1;
           Granulibacter bethesdensis CGDNIH1|Rep: Hypothetical
           cytosolic protein - Granulobacter bethesdensis (strain
           ATCC BAA-1260 / CGDNIH1)
          Length = 90

 Score = 33.9 bits (74), Expect = 5.7
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +3

Query: 186 QKLKEHGA--SSCISGKRGRRCCNIWHWGSVDSISGSRAR 299
           Q L+EHG    S ++G+R  RC N WH G  D +   R R
Sbjct: 42  QALREHGTFQGSMLAGRRILRC-NPWHQGGYDPVPAGRCR 80


>UniRef50_Q7RWH7 Cluster: Putative uncharacterized protein NCU01431.1;
            n=2; Sordariomycetes|Rep: Putative uncharacterized
            protein NCU01431.1 - Neurospora crassa
          Length = 1817

 Score = 33.1 bits (72), Expect = 9.9
 Identities = 17/54 (31%), Positives = 19/54 (35%)
 Frame = +2

Query: 734  PFXPPXPXXPXPSLPXXVSGXRGXVGGXFXSSXXXPPPPXXXXSLXGXPFXFPP 895
            P  PP P  P P  P  + G    + G        PPPP       G P   PP
Sbjct: 1030 PPPPPPPPPPPPPPPGFLPGAPAPIPGAGGPPPPPPPPPPPPPPPGGLPGAAPP 1083


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 653,813,401
Number of Sequences: 1657284
Number of extensions: 10863249
Number of successful extensions: 25713
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25106
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 81161904978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)