Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_F15
         (929 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    31   0.18 
SPBC577.15c |||NASP family histone binding protein|Schizosacchar...    29   0.93 
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    28   1.6  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    27   2.8  
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    27   5.0  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    27   5.0  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    26   6.6  

>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -3

Query: 276 AIAGPALINPSRTLRPTFSIFLKSFHLGSGAALTAP 169
           AIA P +I+P  ++RP  S+F+KS      A + +P
Sbjct: 202 AIADPNIISPIDSVRPLLSLFIKSITSAISALILSP 237


>SPBC577.15c |||NASP family histone binding
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 393 LNSLKLEIHNYLQSCFKLNASLEFNDKVY 307
           L  L LEI N+ Q+   L  +LE+ +KVY
Sbjct: 205 LGELSLEIENFSQASQDLKTALEWKEKVY 233


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -3

Query: 213 LKSFH-LGSGAALTAPRASTNAKTKLKIRTKFILPKFYSAGEFKIPIQYRSTRTLRMIKS 37
           L+S H L S  + T PR   N    +    K + P  ++   F+I + Y  TR L  I++
Sbjct: 291 LQSVHYLISTISATLPRTLYNIVLFMVAAAKTVAPSVFATFAFRISVMYAVTRILPAIQN 350


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/54 (22%), Positives = 28/54 (51%)
 Frame = -3

Query: 378 LEIHNYLQSCFKLNASLEFNDKVYFPNDFACPMTAIAGPALINPSRTLRPTFSI 217
           L +H YL +C +  + +E    ++    +   +T+I  P +++PS+ +    S+
Sbjct: 130 LLLHLYLLNCHEQGSLIEEPRPLFLDPSWKEKVTSIMSPQMVDPSKMISSCLSL 183


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 677 NFLNIHSNKTYNVKLKDEL 621
           NF++ H NK Y + L DEL
Sbjct: 233 NFMDKHLNKPYEINLMDEL 251


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = -3

Query: 165 ASTNAKTKLKIRTKFILPKFYSAGEFK--IPIQYRSTRTLRMIKS*GFPIVSR 13
           + T++ T  ++ T  ++  FY   + +  +PIQ    + L ++++  FP VSR
Sbjct: 552 SDTSSVTVRRLATSTLIRLFYYYYDLRDAVPIQETLAKMLEILETPSFPFVSR 604


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 719 IRYRYTQKKKNENLNFLNIHSNKTYNVKLKD 627
           I+Y + Q   + +L   NI  +K YNVKL D
Sbjct: 136 IQYLHRQGCVHRDLKLENIFLDKAYNVKLGD 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,945,016
Number of Sequences: 5004
Number of extensions: 52043
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)