Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_F14
         (919 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)              29   4.0  
SB_902| Best HMM Match : Collagen (HMM E-Value=0.00027)                29   4.0  
SB_14922| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.0  
SB_54449| Best HMM Match : bZIP_2 (HMM E-Value=1.2)                    29   7.0  

>SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
          Length = 291

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
 Frame = +2

Query: 113 SAILCQVGYSPIAFRVGLH-PSAAILVAAGAWLL------PATKWVCRTVSCTYLFSFK* 271
           SAIL +V YS   +       S +ILVA G+ +L       +  W+C T SC  LF +  
Sbjct: 190 SAILIRVSYSCRTWICSTSFMSPSILVAVGSAVLIHVALYSSRTWICSTYSCRLLF-YSQ 248

Query: 272 L*ILFQFVYYCIMVKL 319
           L + + F+   I+V L
Sbjct: 249 LDLQYLFMSPSILVAL 264


>SB_902| Best HMM Match : Collagen (HMM E-Value=0.00027)
          Length = 617

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
 Frame = +2

Query: 113 SAILCQVGYSPIAFRVGLH-PSAAILVAAGAWLL------PATKWVCRTVSCTYLFSFK* 271
           SAIL +V YS   +       S +ILVA G+ +L       +  W+C T SC  LF +  
Sbjct: 128 SAILIRVSYSCRTWICSTSFMSPSILVAVGSAVLIHVALYSSRTWICSTYSCRLLF-YSQ 186

Query: 272 L*ILFQFVYYCIMVKL 319
           L + + F+   I+V L
Sbjct: 187 LDLQYLFMSPSILVAL 202



 Score = 29.1 bits (62), Expect = 5.3
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
 Frame = +2

Query: 164 LHPSAAILVAAGAWLL------PATKWVCRTVSCTYLFSFK*L*ILFQFVYYCIMVKLEF 325
           L  S +ILVA G+ +L       +  W+C T SC  LF +  L + + F+   I+V L  
Sbjct: 213 LFMSPSILVAVGSAVLIHVAFYSSRTWICSTYSCRLLF-YSQLDLQYLFISPSILVALGS 271

Query: 326 QLYSY 340
           ++  Y
Sbjct: 272 EVIIY 276


>SB_14922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 505

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 122 KWHWFSSGATPHKHVTTRNTMTDQMP 45
           K +WFSS  T   H+T +++ T+ MP
Sbjct: 56  KLNWFSSPKTSRYHLTVQSSDTESMP 81


>SB_54449| Best HMM Match : bZIP_2 (HMM E-Value=1.2)
          Length = 258

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
 Frame = -1

Query: 214 WQQPRPSGDQDGGRRMQTHAKRN-----GTVSDLAQNGTGLVPELHHTNTSPQET 65
           W +PR   ++DGG R      R      G+V+++ Q  T  V EL     + +ET
Sbjct: 67  WSKPRQLFNEDGGVRQDVAKLRGFRLAMGSVAEIIQENTERVQELQGVVATDRET 121


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,961,726
Number of Sequences: 59808
Number of extensions: 315054
Number of successful extensions: 892
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2657535823
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)