Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_F12
         (1060 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.6  
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.6  
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)                  29   6.3  

>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 18/69 (26%), Positives = 23/69 (33%)
 Frame = +2

Query: 545 PXLSAXPXRRXXPXXEPWPSXXXXXLGXPXXPQVCRPPSNXPXXXAPXPPTPRKTXXLPX 724
           P L+     +  P   P P+        P  P    P S  P    P P TP  T   P 
Sbjct: 8   PTLTTPTLTKATPQTTPTPTKPTPTTHTPTKPSPTTPTSTAPTQTTPTPTTPSPT--APT 65

Query: 725 XSHSXPSHP 751
            +   P+ P
Sbjct: 66  QTTPTPATP 74


>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 21/74 (28%), Positives = 24/74 (32%)
 Frame = +2

Query: 530 NXXXPPXLSAXPXRRXXPXXEPWPSXXXXXLGXPXXPQVCRPPSNXPXXXAPXPPTPRKT 709
           N   PP L   P     P   P+P         P  P    PP   P   AP PP P   
Sbjct: 153 NPPYPPPLYPPPPN-PPPPNAPYPPPPYPPPPNPPYPPPPNPPY-PPPPNAPNPPPPNPP 210

Query: 710 XXLPXXSHSXPSHP 751
              P  + + P  P
Sbjct: 211 YPPPPNAPNPPYPP 224


>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
          Length = 457

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 17/53 (32%), Positives = 17/53 (32%)
 Frame = +2

Query: 542 PPXLSAXPXRRXXPXXEPWPSXXXXXLGXPXXPQVCRPPSNXPXXXAPXPPTP 700
           PP  S  P     P   P P         P  P    PP   P   AP PP P
Sbjct: 373 PPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPP 425


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,547,020
Number of Sequences: 59808
Number of extensions: 87484
Number of successful extensions: 393
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 16,821,457
effective HSP length: 83
effective length of database: 11,857,393
effective search space used: 3189638717
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)