Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_F12
         (1060 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily a...    31   1.8  
AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily a...    31   1.8  
AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical...    30   3.2  

>AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform b protein.
          Length = 774

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 15/41 (36%), Positives = 16/41 (39%)
 Frame = +2

Query: 629 PXXPQVCRPPSNXPXXXAPXPPTPRKTXXLPXXSHSXPSHP 751
           P  P    P SN P    P PP P+ T   P    S P  P
Sbjct: 73  PPLPPPPLPLSNPPAKPTPPPPPPKPTIRPPPIPASPPPRP 113


>AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform a protein.
          Length = 996

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 15/41 (36%), Positives = 16/41 (39%)
 Frame = +2

Query: 629 PXXPQVCRPPSNXPXXXAPXPPTPRKTXXLPXXSHSXPSHP 751
           P  P    P SN P    P PP P+ T   P    S P  P
Sbjct: 295 PPLPPPPLPLSNPPAKPTPPPPPPKPTIRPPPIPASPPPRP 335


>AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical
           protein Y43F8C.20 protein.
          Length = 193

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 20/64 (31%), Positives = 21/64 (32%)
 Frame = -2

Query: 732 WEXXGRXXVFRGVGGXGAXXXGXLDGGRQTWGXXGXPRXXXXXEGQGSXLGXXRRXGXAX 553
           W   G     RG GG G    G  +GG   WG  G  R      G G   G  R      
Sbjct: 49  WGNNGGGGWGRG-GGRGGGDWGGNNGGGGNWGGNGGGRGDWGGNGGGGRGGGGRGDWGGN 107

Query: 552 RXGG 541
             GG
Sbjct: 108 NNGG 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,570,149
Number of Sequences: 27780
Number of extensions: 80174
Number of successful extensions: 210
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2824804260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)