Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_F11
         (1150 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P05143 Cluster: Proline-rich protein 2 precursor; n=10;...    38   0.64 

>UniRef50_P05143 Cluster: Proline-rich protein 2 precursor; n=10;
            Deuterostomia|Rep: Proline-rich protein 2 precursor - Mus
            musculus (Mouse)
          Length = 317

 Score = 37.5 bits (83), Expect = 0.64
 Identities = 25/80 (31%), Positives = 27/80 (33%), Gaps = 1/80 (1%)
 Frame = +2

Query: 890  RXPRGXRXPGAAXXREXARTQEPQXSXXRSPSXPXPPXTXAXQPXXXXXRXAGXXXRRPX 1069
            R P+G   PG    R       P     R P  P PP     +P       AG   R P 
Sbjct: 117  RPPQGPPPPGGPQPRPPQGPPPPGGPQQRPPQGPPPPGGPQPRPPQGPPPPAGPQPRPPQ 176

Query: 1070 GSXXXPPPXHP-XXPXDXPP 1126
            G    PPP  P   P   PP
Sbjct: 177  G---PPPPAGPHLRPTQGPP 193



 Score = 36.3 bits (80), Expect = 1.5
 Identities = 25/88 (28%), Positives = 28/88 (31%), Gaps = 2/88 (2%)
 Frame = +2

Query: 890  RXPRGXRXPGAAXXREXARTQEPQXSXXRSPSXPXPPXTXAXQPXXXXXRXAGXXXRRPX 1069
            R P+G   PG    R       P     R P  P PP     +P        G   R P 
Sbjct: 103  RPPQGPPPPGGPQPRPPQGPPPPGGPQPRPPQGPPPPGGPQQRPPQGPPPPGGPQPRPPQ 162

Query: 1070 GSXXXPPP--XHPXXPXDXPPXCAXNRR 1147
            G    PPP    P  P   PP    + R
Sbjct: 163  G---PPPPAGPQPRPPQGPPPPAGPHLR 187



 Score = 35.9 bits (79), Expect = 2.0
 Identities = 24/80 (30%), Positives = 26/80 (32%), Gaps = 1/80 (1%)
 Frame = +2

Query: 890  RXPRGXRXPGAAXXREXARTQEPQXSXXRSPSXPXPPXTXAXQPXXXXXRXAGXXXRRPX 1069
            R P+G   PG    R       P     R P  P PP     +P        G   R P 
Sbjct: 61   RPPQGPPPPGGPQPRPPQGPPPPGGPQPRPPQGPPPPGGPQPRPPQGPPPPGGPQPRPPQ 120

Query: 1070 GSXXXPPPXHP-XXPXDXPP 1126
            G    PPP  P   P   PP
Sbjct: 121  G---PPPPGGPQPRPPQGPP 137



 Score = 35.9 bits (79), Expect = 2.0
 Identities = 24/79 (30%), Positives = 26/79 (32%)
 Frame = +2

Query: 890  RXPRGXRXPGAAXXREXARTQEPQXSXXRSPSXPXPPXTXAXQPXXXXXRXAGXXXRRPX 1069
            R P+G   PG    R       P     R P  P PP     +P        G   R P 
Sbjct: 75   RPPQGPPPPGGPQPRPPQGPPPPGGPQPRPPQGPPPPGGPQPRPPQGPPPPGGPQPRPPQ 134

Query: 1070 GSXXXPPPXHPXXPXDXPP 1126
            G    PPP  P  P   PP
Sbjct: 135  G----PPP--PGGPQQRPP 147



 Score = 35.9 bits (79), Expect = 2.0
 Identities = 24/80 (30%), Positives = 26/80 (32%), Gaps = 1/80 (1%)
 Frame = +2

Query: 890  RXPRGXRXPGAAXXREXARTQEPQXSXXRSPSXPXPPXTXAXQPXXXXXRXAGXXXRRPX 1069
            R P+G   PG    R       P     R P  P PP     +P        G   R P 
Sbjct: 89   RPPQGPPPPGGPQPRPPQGPPPPGGPQPRPPQGPPPPGGPQPRPPQGPPPPGGPQQRPPQ 148

Query: 1070 GSXXXPPPXHP-XXPXDXPP 1126
            G    PPP  P   P   PP
Sbjct: 149  G---PPPPGGPQPRPPQGPP 165


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 407,870,954
Number of Sequences: 1657284
Number of extensions: 3962286
Number of successful extensions: 9701
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 6060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8697
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 113846332040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)