Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_F11
         (1150 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y17397-1|CAA76763.1| 1690|Homo sapiens collagen alpha 4 type IV ...    26   8.9  
X81053-1|CAA56943.1| 1690|Homo sapiens type IV collagen alpha 4 ...    26   8.9  
AC079235-1|AAY14670.1| 1324|Homo sapiens unknown protein.              26   9.1  

>Y17397-1|CAA76763.1| 1690|Homo sapiens collagen alpha 4 type IV
            protein.
          Length = 1690

 Score = 26.2 bits (55), Expect(2) = 8.9
 Identities = 15/53 (28%), Positives = 19/53 (35%)
 Frame = +3

Query: 768  PGXXRXAPPTXXXQXXXLPGPXXXXAXPXXSRXSXRPXXAXAXPGXXGXXGPP 926
            PG    +PP    +    PGP      P  +  + R       PG  G  GPP
Sbjct: 1215 PGSPGISPPGPRGKKGP-PGPPGSSGPPGPAGATGRAPKDIPDPGPPGDQGPP 1266



 Score = 23.0 bits (47), Expect(2) = 8.9
 Identities = 11/36 (30%), Positives = 11/36 (30%)
 Frame = +3

Query: 900  GXXGXXGPPXAGXXXXLRNRNXAXXGAXAXPXPPAP 1007
            G  G  GPP       L        G    P PP P
Sbjct: 1270 GPRGAPGPPGLPGSVDLLRGEPGDCGLPGPPGPPGP 1305


>X81053-1|CAA56943.1| 1690|Homo sapiens type IV collagen alpha 4 chain
            protein.
          Length = 1690

 Score = 26.2 bits (55), Expect(2) = 8.9
 Identities = 15/53 (28%), Positives = 19/53 (35%)
 Frame = +3

Query: 768  PGXXRXAPPTXXXQXXXLPGPXXXXAXPXXSRXSXRPXXAXAXPGXXGXXGPP 926
            PG    +PP    +    PGP      P  +  + R       PG  G  GPP
Sbjct: 1215 PGSPGISPPGPRGKKGP-PGPPGSSGPPGPAGATGRAPKDIPDPGPPGDQGPP 1266



 Score = 23.0 bits (47), Expect(2) = 8.9
 Identities = 11/36 (30%), Positives = 11/36 (30%)
 Frame = +3

Query: 900  GXXGXXGPPXAGXXXXLRNRNXAXXGAXAXPXPPAP 1007
            G  G  GPP       L        G    P PP P
Sbjct: 1270 GPRGAPGPPGLPGSVDLLRGEPGDCGLPGPPGPPGP 1305


>AC079235-1|AAY14670.1| 1324|Homo sapiens unknown protein.
          Length = 1324

 Score = 26.2 bits (55), Expect(2) = 9.1
 Identities = 15/53 (28%), Positives = 19/53 (35%)
 Frame = +3

Query: 768  PGXXRXAPPTXXXQXXXLPGPXXXXAXPXXSRXSXRPXXAXAXPGXXGXXGPP 926
            PG    +PP    +    PGP      P  +  + R       PG  G  GPP
Sbjct: 1215 PGSPGISPPGPRGKKGP-PGPPGSSGPPGPAGATGRAPKDIPDPGPPGDQGPP 1266



 Score = 23.0 bits (47), Expect(2) = 9.1
 Identities = 11/36 (30%), Positives = 11/36 (30%)
 Frame = +3

Query: 900  GXXGXXGPPXAGXXXXLRNRNXAXXGAXAXPXPPAP 1007
            G  G  GPP       L        G    P PP P
Sbjct: 1270 GPRGAPGPPGLPGSVDLLRGEPGDCGLPGPPGPPGP 1305


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,455,357
Number of Sequences: 237096
Number of extensions: 885054
Number of successful extensions: 2143
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1948
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 15963406700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)