Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_F11
         (1150 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical pr...    29   8.2  

>U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical protein
            C50F7.5 protein.
          Length = 309

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 23/77 (29%), Positives = 24/77 (31%), Gaps = 9/77 (11%)
 Frame = +2

Query: 896  PRGXRXPGAAXXREXARTQEP------QXSXXRSPSXPXPPXTXAXQPXXXXXRXAGXXX 1057
            P G   PG     E  +  EP        S   SPS P  P      P        G   
Sbjct: 206  PSGPPSPGPVDPSEDPKPSEPPSPGPVDPSDEPSPSDPPGPPGPPGPPTRRPPGPPGPPT 265

Query: 1058 RRPXGSXXXP---PPXH 1099
            RRP G    P   PP H
Sbjct: 266  RRPPGPPGPPTRRPPGH 282


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,194,891
Number of Sequences: 27780
Number of extensions: 104061
Number of successful extensions: 253
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3119902942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)