Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_F10
(976 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 32 0.11
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.14
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.19
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 0.22
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.75
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 27 3.0
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.0
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 27 4.0
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 5.3
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 23 6.1
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 32.3 bits (70), Expect = 0.11
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +2
Query: 644 PPPPXPPPXXPPPXPPXP 697
PPPP PPP PP P P
Sbjct: 9 PPPPPPPPGFEPPSQPPP 26
Score = 31.9 bits (69), Expect = 0.14
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +2
Query: 644 PPPPXPPPXXPPPXPPXP 697
PPPP PP PP PP P
Sbjct: 10 PPPPPPPGFEPPSQPPPP 27
Score = 30.3 bits (65), Expect = 0.43
Identities = 12/19 (63%), Positives = 12/19 (63%), Gaps = 3/19 (15%)
Frame = +2
Query: 644 PPPPXP---PPXXPPPXPP 691
PPPP P PP PPP PP
Sbjct: 11 PPPPPPGFEPPSQPPPPPP 29
Score = 29.1 bits (62), Expect = 0.99
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +1
Query: 709 PPXKPPXXPPXPPKPXPXHNXPPP 780
PP PP PP P P PPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPP 28
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.9 bits (69), Expect = 0.14
Identities = 13/22 (59%), Positives = 13/22 (59%), Gaps = 4/22 (18%)
Frame = +2
Query: 644 PPPPXPPP----XXPPPXPPXP 697
PPPP PPP PPP PP P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPP 782
Score = 28.3 bits (60), Expect = 1.7
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 647 PPPXPPPXXPPPXPPXP 697
PPP P PPP PP P
Sbjct: 752 PPPAPIMGGPPPPPPPP 768
Score = 27.1 bits (57), Expect = 4.0
Identities = 15/53 (28%), Positives = 16/53 (30%), Gaps = 1/53 (1%)
Frame = +2
Query: 641 TPPPPXPPPXXPPPXP-PXPXXXXXXXXXXXXXXXXXXHXXXTTXPPPXXXPP 796
+PPPP P P P P P P PPP PP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 31.5 bits (68), Expect = 0.19
Identities = 14/24 (58%), Positives = 14/24 (58%)
Frame = -3
Query: 779 GGGXLWXGXGLGGXGGXXGGXXGG 708
GGG G GLGG GG GG GG
Sbjct: 241 GGGPGGFGGGLGGFGGGPGGFGGG 264
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 779 GGGXLWXGXGLGGXGGXXGGXXGGV 705
GGG G GG GG GG GG+
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGL 251
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect(2) = 0.22
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +2
Query: 647 PPPXPPPXXPPPXPP 691
P P PPP PP PP
Sbjct: 234 PLPAPPPPPPPTLPP 248
Score = 24.6 bits (51), Expect(2) = 2.9
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +2
Query: 641 TPPPPXPPPXXPPPXPP 691
TP P P PPP PP
Sbjct: 228 TPKQADPLPAPPPPPPP 244
Score = 24.2 bits (50), Expect(2) = 2.9
Identities = 9/20 (45%), Positives = 9/20 (45%)
Frame = +2
Query: 623 PXXQXXTPPPPXPPPXXPPP 682
P P PP PPP PP
Sbjct: 229 PKQADPLPAPPPPPPPTLPP 248
Score = 23.4 bits (48), Expect(2) = 0.22
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +2
Query: 644 PPPPXPPP 667
PPPP PPP
Sbjct: 190 PPPPPPPP 197
Score = 21.4 bits (43), Expect(2) = 2.9
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = +2
Query: 659 PPPXXPPPXPPXP 697
PPP P PP P
Sbjct: 273 PPPPATPSQPPRP 285
Score = 21.0 bits (42), Expect(2) = 2.9
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = +2
Query: 623 PXXQXXTPPPPXPP 664
P PPPP PP
Sbjct: 184 PSDYNPPPPPPPPP 197
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.5 bits (63), Expect = 0.75
Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Frame = +2
Query: 623 PXXQXXTPPPP---XPPPXXPPPXPPXP 697
P TPPPP PPP PP P P
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGP 1727
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Frame = +2
Query: 623 PXXQXXTPPPPXPP-PXXPPPXPPXP 697
P PPP PP P PP PP P
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 26.6 bits (56), Expect = 5.3
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +1
Query: 709 PPXKPPXXPPXPPKPXPXHNXPPP 780
PP P P PP P + PPP
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPP 1733
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 27.5 bits (58), Expect = 3.0
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 706 TPPXKPPXXPPXPPKPXPXHNXP 774
TP + PP PP P P +N P
Sbjct: 348 TPQVQGSRPPPPPPMPAPIYNVP 370
Score = 22.6 bits (46), Expect(2) = 5.1
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = +2
Query: 623 PXXQXXTPPPPXPPP 667
P Q PPPP P P
Sbjct: 349 PQVQGSRPPPPPPMP 363
Score = 22.2 bits (45), Expect(2) = 5.1
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = +2
Query: 644 PPPPXPPPXXPPPXPP 691
PPPP P P P P
Sbjct: 358 PPPPMPAPIYNVPNVP 373
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.5 bits (58), Expect = 3.0
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +1
Query: 709 PPXKPPXXPPXPPKPXPXHNXPPPXXXP 792
PP P PP P K P + PP P
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQP 177
Score = 26.6 bits (56), Expect = 5.3
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +2
Query: 644 PPPPXPPPXXPPPXPP 691
PPPP P P P PP
Sbjct: 7 PPPPAPAPAAAAPAPP 22
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 27.1 bits (57), Expect = 4.0
Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Frame = -2
Query: 690 GGXGGGXXGGGXGG--GGVXXCXXGRF 616
GG GGG GG GG GG GRF
Sbjct: 168 GGFGGGSRGGSRGGFRGGSRGGFRGRF 194
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/19 (57%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
Frame = +2
Query: 641 TPP--PPXPPPXXPPPXPP 691
TPP PP PP PP PP
Sbjct: 419 TPPSLPPSAPPSLPPSAPP 437
Score = 25.8 bits (54), Expect = 9.3
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +2
Query: 644 PPPPXPPPXXPPPXPP 691
P PP PP PP PP
Sbjct: 418 PTPPSLPPSAPPSLPP 433
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 23.0 bits (47), Expect(2) = 6.1
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +2
Query: 650 PPXPPPXXPPPXPP 691
P PPP PPP PP
Sbjct: 942 PAFPPP--PPPPPP 953
Score = 21.4 bits (43), Expect(2) = 6.1
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2
Query: 641 TPPPPXPPP 667
TPPPP P P
Sbjct: 906 TPPPPPPLP 914
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.311 0.146 0.499
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,061,193
Number of Sequences: 5004
Number of extensions: 12034
Number of successful extensions: 224
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 501293686
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
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