Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_F10
         (976 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    27   0.34 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.78 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   5.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   5.5  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 26.6 bits (56), Expect = 0.34
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 641 TPPPPXPPPXXPPPXPPXP 697
           TPP P PPP  PPP    P
Sbjct: 337 TPPKPAPPP--PPPSSSGP 353


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.78
 Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
 Frame = +2

Query: 632 QXXTPPPPX--PPPXXPPPXPP 691
           Q  +PP P   PPP  PP  PP
Sbjct: 35  QRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.0 bits (47), Expect = 4.2
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 647 PPPXPPPXXPPPXPP 691
           PPP  PP  PP   P
Sbjct: 46  PPPGGPPGAPPSQNP 60


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 617  KRPXXQXXTPPPPXPPP 667
            +R   +   PPPP PPP
Sbjct: 1346 ERTAWRQQQPPPPPPPP 1362


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 779  GGGXLWXGXGLGGXGGXXGGXXGGV 705
            GGG L    GLGG GG       G+
Sbjct: 1706 GGGSLAGLGGLGGLGGAAEASAAGL 1730


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 779  GGGXLWXGXGLGGXGGXXGGXXGGV 705
            GGG L    GLGG GG       G+
Sbjct: 1702 GGGSLAGLGGLGGLGGAAEASAAGL 1726


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.311    0.146    0.499 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,186
Number of Sequences: 438
Number of extensions: 3888
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32169774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)