Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_F09
(964 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal pro... 132 4e-31
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 36 0.043
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 35 0.075
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 35 0.075
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 35 0.075
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 35 0.099
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 35 0.099
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 33 0.40
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 33 0.40
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 31 1.2
U41106-1|AAA82409.1| 347|Caenorhabditis elegans Hypothetical pr... 31 1.6
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 30 2.1
U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical pr... 29 6.5
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 29 6.5
L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family ... 28 8.6
>AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7 protein.
Length = 244
Score = 132 bits (319), Expect = 4e-31
Identities = 65/128 (50%), Positives = 89/128 (69%)
Frame = +1
Query: 184 SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERD 363
+KK+P VPE+VLK Q + + +KK + FKRAE+YV+EYR +++
Sbjct: 4 TKKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQEYRNAQKE 63
Query: 364 EIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNK 543
+RL R+A +G++YVP E K+AFV+RIRGINQ+ PK RK LQ+ RLRQINNGVFV+LNK
Sbjct: 64 GLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLNK 123
Query: 544 ATVNIXPI 567
AT+ + I
Sbjct: 124 ATLPLLRI 131
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 35.9 bits (79), Expect = 0.043
Identities = 33/122 (27%), Positives = 36/122 (29%)
Frame = -2
Query: 942 GGXGXXXXXGXQRXXPXGXKXGGVWGAXPXXGGVSNLXGAXGXXXGXXGNXXPXXXXXXG 763
GG G G G + GG WG GG N G G GN G
Sbjct: 44 GGPGGWGNNGGGGWGRGGGRGGGDWGG--NNGGGGNWGGNGGGRGDWGGN---------G 92
Query: 762 GGGRKXXXXGGVXGAXFXXXXXWGRXWXXXXPXXXGGXXGXVKXXXGGXXXEGGGXPQTN 583
GGGR G G WG G GG +G G P +N
Sbjct: 93 GGGRGGGGRGDWGGNNNGGGGNWGGGGNNDGGWGGNNGGGGGGRGGGGRGGDGRGPPGSN 152
Query: 582 XG 577
G
Sbjct: 153 GG 154
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 35.1 bits (77), Expect = 0.075
Identities = 31/109 (28%), Positives = 34/109 (31%)
Frame = -2
Query: 891 GXKXGGVWGAXPXXGGVSNLXGAXGXXXGXXGNXXPXXXXXXGGGGRKXXXXGGVXGAXF 712
G GG WG GG G G G G GGGG+ GG G
Sbjct: 222 GGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQ-----GGWGG--- 273
Query: 711 XXXXXWGRXWXXXXPXXXGGXXGXVKXXXGGXXXEGGGXPQTNXGXGGY 565
G W GG G + GG G PQ G GG+
Sbjct: 274 PQQQQGGGGWGQQGGGGQGGWGGPQQQQQGGW-----GGPQQGGGGGGW 317
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 35.1 bits (77), Expect = 0.075
Identities = 31/109 (28%), Positives = 34/109 (31%)
Frame = -2
Query: 891 GXKXGGVWGAXPXXGGVSNLXGAXGXXXGXXGNXXPXXXXXXGGGGRKXXXXGGVXGAXF 712
G GG WG GG G G G G GGGG+ GG G
Sbjct: 184 GGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQ-----GGWGG--- 235
Query: 711 XXXXXWGRXWXXXXPXXXGGXXGXVKXXXGGXXXEGGGXPQTNXGXGGY 565
G W GG G + GG G PQ G GG+
Sbjct: 236 PQQQQGGGGWGQQGGGGQGGWGGPQQQQQGGW-----GGPQQGGGGGGW 279
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 35.1 bits (77), Expect = 0.075
Identities = 31/109 (28%), Positives = 34/109 (31%)
Frame = -2
Query: 891 GXKXGGVWGAXPXXGGVSNLXGAXGXXXGXXGNXXPXXXXXXGGGGRKXXXXGGVXGAXF 712
G GG WG GG G G G G GGGG+ GG G
Sbjct: 222 GGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQ-----GGWGG--- 273
Query: 711 XXXXXWGRXWXXXXPXXXGGXXGXVKXXXGGXXXEGGGXPQTNXGXGGY 565
G W GG G + GG G PQ G GG+
Sbjct: 274 PQQQQGGGGWGQQGGGGQGGWGGPQQQQQGGW-----GGPQQGGGGGGW 317
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 34.7 bits (76), Expect = 0.099
Identities = 29/109 (26%), Positives = 34/109 (31%), Gaps = 1/109 (0%)
Frame = +2
Query: 620 PPXXXFTXPCXPPXXXGXXFXXSLPXXXXXKKXAPXTPPXXXXLRPPPPXXXXXXGXXFP 799
PP P PP +P + PP + PPPP G P
Sbjct: 290 PPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPP 349
Query: 800 XXPXXXPXA-PXKFETPPXXGXAPQTPPXFXPXGXXLXSPXXNXXPXPP 943
P P A P + PP P PP P G + P P PP
Sbjct: 350 PPPPRYPSAGPGMYPPPP-----PSRPPA-PPSGHGMIPP-----PPPP 387
Score = 33.1 bits (72), Expect = 0.30
Identities = 21/79 (26%), Positives = 23/79 (29%)
Frame = +2
Query: 644 PCXPPXXXGXXFXXSLPXXXXXKKXAPXTPPXXXXLRPPPPXXXXXXGXXFPXXPXXXPX 823
P PP +P P PP + PPPP P P P
Sbjct: 262 PVPPPPPSVTPMPPPMPPTPGMTPRPP--PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPP 319
Query: 824 APXKFETPPXXGXAPQTPP 880
P PP G P PP
Sbjct: 320 PPPSRFGPPGMGGMPPPPP 338
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/63 (31%), Positives = 20/63 (31%)
Frame = +2
Query: 755 PPPPXXXXXXGXXFPXXPXXXPXAPXKFETPPXXGXAPQTPPXFXPXGXXLXSPXXNXXP 934
PPPP P P P P PP G P PP P G P P
Sbjct: 264 PPPPPSVTPMPPPMPPTPGMTPRPPP----PPSSGMWPPPPPP--PPGRTPGPPGMPGMP 317
Query: 935 XPP 943
PP
Sbjct: 318 PPP 320
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 34.7 bits (76), Expect = 0.099
Identities = 29/109 (26%), Positives = 34/109 (31%), Gaps = 1/109 (0%)
Frame = +2
Query: 620 PPXXXFTXPCXPPXXXGXXFXXSLPXXXXXKKXAPXTPPXXXXLRPPPPXXXXXXGXXFP 799
PP P PP +P + PP + PPPP G P
Sbjct: 300 PPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPP 359
Query: 800 XXPXXXPXA-PXKFETPPXXGXAPQTPPXFXPXGXXLXSPXXNXXPXPP 943
P P A P + PP P PP P G + P P PP
Sbjct: 360 PPPPRYPSAGPGMYPPPP-----PSRPPA-PPSGHGMIPP-----PPPP 397
Score = 33.1 bits (72), Expect = 0.30
Identities = 21/79 (26%), Positives = 23/79 (29%)
Frame = +2
Query: 644 PCXPPXXXGXXFXXSLPXXXXXKKXAPXTPPXXXXLRPPPPXXXXXXGXXFPXXPXXXPX 823
P PP +P P PP + PPPP P P P
Sbjct: 272 PVPPPPPSVTPMPPPMPPTPGMTPRPP--PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPP 329
Query: 824 APXKFETPPXXGXAPQTPP 880
P PP G P PP
Sbjct: 330 PPPSRFGPPGMGGMPPPPP 348
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/63 (31%), Positives = 20/63 (31%)
Frame = +2
Query: 755 PPPPXXXXXXGXXFPXXPXXXPXAPXKFETPPXXGXAPQTPPXFXPXGXXLXSPXXNXXP 934
PPPP P P P P PP G P PP P G P P
Sbjct: 274 PPPPPSVTPMPPPMPPTPGMTPRPPP----PPSSGMWPPPPPP--PPGRTPGPPGMPGMP 327
Query: 935 XPP 943
PP
Sbjct: 328 PPP 330
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 32.7 bits (71), Expect = 0.40
Identities = 30/109 (27%), Positives = 32/109 (29%)
Frame = -2
Query: 891 GXKXGGVWGAXPXXGGVSNLXGAXGXXXGXXGNXXPXXXXXXGGGGRKXXXXGGVXGAXF 712
G GG WG GG G G G G GGG GG G
Sbjct: 184 GGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGG-------GNYGGGWGQQGGGGQGGWGG 236
Query: 711 XXXXXWGRXWXXXXPXXXGGXXGXVKXXXGGXXXEGGGXPQTNXGXGGY 565
G W GG G + GG G PQ G GG+
Sbjct: 237 PQQQQGGGGWGQQGGGGQGGWGGPQQQQQGGW-----GGPQQGGGGGGW 280
Score = 29.5 bits (63), Expect = 3.7
Identities = 19/66 (28%), Positives = 22/66 (33%)
Frame = -2
Query: 762 GGGRKXXXXGGVXGAXFXXXXXWGRXWXXXXPXXXGGXXGXVKXXXGGXXXEGGGXPQTN 583
GG + GG G WG P GG G + GG GG Q
Sbjct: 170 GGRSRDGQRGGYNGGG-GGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQQGG 228
Query: 582 XGXGGY 565
G GG+
Sbjct: 229 GGQGGW 234
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 32.7 bits (71), Expect = 0.40
Identities = 30/109 (27%), Positives = 32/109 (29%)
Frame = -2
Query: 891 GXKXGGVWGAXPXXGGVSNLXGAXGXXXGXXGNXXPXXXXXXGGGGRKXXXXGGVXGAXF 712
G GG WG GG G G G G GGG GG G
Sbjct: 222 GGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGG-------GNYGGGWGQQGGGGQGGWGG 274
Query: 711 XXXXXWGRXWXXXXPXXXGGXXGXVKXXXGGXXXEGGGXPQTNXGXGGY 565
G W GG G + GG G PQ G GG+
Sbjct: 275 PQQQQGGGGWGQQGGGGQGGWGGPQQQQQGGW-----GGPQQGGGGGGW 318
Score = 29.5 bits (63), Expect = 3.7
Identities = 19/66 (28%), Positives = 22/66 (33%)
Frame = -2
Query: 762 GGGRKXXXXGGVXGAXFXXXXXWGRXWXXXXPXXXGGXXGXVKXXXGGXXXEGGGXPQTN 583
GG + GG G WG P GG G + GG GG Q
Sbjct: 208 GGRSRDGQRGGYNGGG-GGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQQGG 266
Query: 582 XGXGGY 565
G GG+
Sbjct: 267 GGQGGW 272
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 31.1 bits (67), Expect = 1.2
Identities = 33/126 (26%), Positives = 37/126 (29%), Gaps = 1/126 (0%)
Frame = -2
Query: 942 GGXGXXXXXGXQRXXPXGXKXGGVWGAXPXXGGVSNLXGAXGXXXGXXGNXXPXXXXXXG 763
GG G G P G GG +G GG G G G G G
Sbjct: 130 GGYGGGGYGG-MGGGPGGYGMGG-YGGGGGGGGDFGGYGGGGMGGGGYGGGGDGGYGGGG 187
Query: 762 -GGGRKXXXXGGVXGAXFXXXXXWGRXWXXXXPXXXGGXXGXVKXXXGGXXXEGGGXPQT 586
GGG GG+ G + G + G G GG GGG
Sbjct: 188 FGGGGMGGYGGGMGGGGYGGGGMGGGGYGGGGDGGYGPSGG-----YGGGYGPGGGYGMG 242
Query: 585 NXGXGG 568
G GG
Sbjct: 243 GGGGGG 248
>U41106-1|AAA82409.1| 347|Caenorhabditis elegans Hypothetical
protein W06A11.4 protein.
Length = 347
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +2
Query: 296 RRRGKSSRGLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKF 466
++R K SR SR ASR +K K A +T P +PN + S S S ++
Sbjct: 21 KKRRKMSRKFTKKSRKRASRASIKLANEQKAKKYANSTVPMEPNVYTDSGSPFSNRY 77
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 30.3 bits (65), Expect = 2.1
Identities = 31/129 (24%), Positives = 33/129 (25%), Gaps = 3/129 (2%)
Frame = -2
Query: 942 GGXGXXXXXGXQRXXPXGXKXGGVWGAXPXXGGVSNLXGAXGXXXGXXGNXXPXXXXXXG 763
GG G G G GG G GG + G G G G
Sbjct: 105 GGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGGGGGCG 164
Query: 762 GGGRKXXXXGGVXGAXFXXXXXWGRXWXXXXPXXXGGXXGXVKXXXG---GXXXEGGGXP 592
GGG G G + G GG G G GGG
Sbjct: 165 GGGGGGCGGGSSGGGGYAVAPSGGGGCGGGGSSGGGGYAVAPSGGGGCGGGGSSGGGGYA 224
Query: 591 QTNXGXGGY 565
G GGY
Sbjct: 225 SAPSGGGGY 233
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 30.3 bits (65), Expect = 2.1
Identities = 31/129 (24%), Positives = 33/129 (25%), Gaps = 3/129 (2%)
Frame = -2
Query: 942 GGXGXXXXXGXQRXXPXGXKXGGVWGAXPXXGGVSNLXGAXGXXXGXXGNXXPXXXXXXG 763
GG G G G GG G GG + G G G G
Sbjct: 105 GGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGGGGGCG 164
Query: 762 GGGRKXXXXGGVXGAXFXXXXXWGRXWXXXXPXXXGGXXGXVKXXXG---GXXXEGGGXP 592
GGG G G + G GG G G GGG
Sbjct: 165 GGGGGGCGGGSSGGGGYAVAPSGGGGCGGGGSSGGGGYAVAPSGGGGCGGGGSSGGGGYA 224
Query: 591 QTNXGXGGY 565
G GGY
Sbjct: 225 SAPSGGGGY 233
>U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical
protein F07C4.7 protein.
Length = 180
Score = 28.7 bits (61), Expect = 6.5
Identities = 31/122 (25%), Positives = 33/122 (27%)
Frame = -2
Query: 942 GGXGXXXXXGXQRXXPXGXKXGGVWGAXPXXGGVSNLXGAXGXXXGXXGNXXPXXXXXXG 763
GG G G GG G GG + G G G G G
Sbjct: 55 GGNNGWNNGGGGFNGNGGFNGGGRGGGRGGNGGFGDNGGLRGGNGGGRGGNGGFDDNGGG 114
Query: 762 GGGRKXXXXGGVXGAXFXXXXXWGRXWXXXXPXXXGGXXGXVKXXXGGXXXEGGGXPQTN 583
GG GG G GR GG GG GGG PQ +
Sbjct: 115 RGGN----GGGRGGTGGFGDNGGGRGGNGGGRGGNGGGNNG-----GGRGGNGGGRPQIS 165
Query: 582 XG 577
G
Sbjct: 166 AG 167
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/53 (30%), Positives = 17/53 (32%)
Frame = -2
Query: 879 GGVWGAXPXXGGVSNLXGAXGXXXGXXGNXXPXXXXXXGGGGRKXXXXGGVXG 721
GG WG G G G G G GGGG + GG G
Sbjct: 78 GGNWGGNGGGGNGGGGRGGGGGGGGGRGGGGGGRGGGGGGGGGRGGGGGGRGG 130
Score = 28.3 bits (60), Expect = 8.6
Identities = 21/74 (28%), Positives = 23/74 (31%)
Frame = -2
Query: 942 GGXGXXXXXGXQRXXPXGXKXGGVWGAXPXXGGVSNLXGAXGXXXGXXGNXXPXXXXXXG 763
GG G G G G WG G +N G G GN G
Sbjct: 41 GGWGRPGWGGGGPGWGRGGGGSG-WGGGRGGGWGNNGGGGNWGGNGGGGNGGGGRGGGGG 99
Query: 762 GGGRKXXXXGGVXG 721
GGG + GG G
Sbjct: 100 GGGGRGGGGGGRGG 113
>L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family
protein 1, isoform d protein.
Length = 759
Score = 28.3 bits (60), Expect = 8.6
Identities = 22/79 (27%), Positives = 25/79 (31%), Gaps = 1/79 (1%)
Frame = -2
Query: 765 GGGGRKXXXXGGVXGAXFXXXXXWGRXWXXXXPXXXGGXXGX-VKXXXGGXXXEGGGXPQ 589
GGGG GG G G G G + GG GGG Q
Sbjct: 54 GGGGGGGGGGGGFGGGNGGFGGGGGGSGGGGGGNNIGSLVGSLIGGGGGGGNYGGGGGNQ 113
Query: 588 TNXGXGGYRXNIHSXLIQT 532
G GG+ N LI +
Sbjct: 114 GGGGGGGFNFNDIGGLINS 132
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,514,750
Number of Sequences: 27780
Number of extensions: 286672
Number of successful extensions: 977
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2490012644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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