Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_F08
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        35   0.017
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.4  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   7.7  

>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 34.7 bits (76), Expect = 0.017
 Identities = 20/33 (60%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = +2

Query: 500 SHIEIST-SKDGSLTFLITGKQSAVLXARRQIL 595
           + I +ST SK  + TFLI GK SAV  ARRQIL
Sbjct: 186 TRINVSTASKTKNTTFLIQGKTSAVKAARRQIL 218


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 251  QHAWVHQDERVSHLQPSWIADASFLSPPAVLVR 153
            Q+ W   D R  HL PSW+  +    PP ++ +
Sbjct: 947  QYLWFEADRR--HLFPSWVKPSDSEPPPLLVYK 977


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 182  MMHQQSMMVGDVIPVHPDVPMHVEEMNNVGYENNVSFAYDDL 307
            ++H    + G  I V P++P H+ +  N  + NN+   Y +L
Sbjct: 1396 ILHGAGALAGPTIEVDPEIPDHLIKTWNTTW-NNLFIYYPEL 1436


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,051,860
Number of Sequences: 5004
Number of extensions: 63164
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)