Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_F08
         (845 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21167| Best HMM Match : KH_1 (HMM E-Value=0)                        47   2e-05
SB_36917| Best HMM Match : RinB (HMM E-Value=2.2)                      30   2.1  
SB_18495| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_24560| Best HMM Match : Ank (HMM E-Value=0)                         28   8.3  
SB_21973| Best HMM Match : XPG_N (HMM E-Value=0.013)                   28   8.3  

>SB_21167| Best HMM Match : KH_1 (HMM E-Value=0)
          Length = 1650

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 22/46 (47%), Positives = 29/46 (63%)
 Frame = +2

Query: 506 IEISTSKDGSLTFLITGKQSAVLXARRQILTHFQQQASNQXSIPKE 643
           IE+S  KD SLT ++TGK   V  ARR +L+  Q QA  +  IP+E
Sbjct: 159 IEVSLGKDLSLTIMVTGKPDTVAKARRLVLSQLQTQAQIEIQIPRE 204


>SB_36917| Best HMM Match : RinB (HMM E-Value=2.2)
          Length = 522

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = -2

Query: 535 TAIFAGRYFDVAPVSLVMNGKFLRILP 455
           T ++ G+Y  V P++ ++ GK++R+LP
Sbjct: 395 TRLYGGKYARVLPLTWLIGGKYVRLLP 421



 Score = 29.9 bits (64), Expect = 2.7
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -2

Query: 535 TAIFAGRYFDVAPVSLVMNGKFLRILP 455
           T +  G+Y  V P++ ++ GK++R+LP
Sbjct: 311 TRLIGGKYVRVLPLTWLIGGKYVRVLP 337



 Score = 28.7 bits (61), Expect = 6.3
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -2

Query: 535 TAIFAGRYFDVAPVSLVMNGKFLRILP 455
           T +  G+Y  V P++ ++ GK++R+LP
Sbjct: 325 TWLIGGKYVRVLPLTWLIGGKYVRLLP 351



 Score = 28.7 bits (61), Expect = 6.3
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -2

Query: 535 TAIFAGRYFDVAPVSLVMNGKFLRILP 455
           T +F  +Y  V P++ ++ GK++R+LP
Sbjct: 367 TRLFGVKYVRVLPLTWLIGGKYVRVLP 393



 Score = 28.3 bits (60), Expect = 8.3
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 535 TAIFAGRYFDVAPVSLVMNGKFLRILP 455
           T +F  +Y  V P++ +  GK++R+LP
Sbjct: 437 TRLFGVKYVRVLPLTRLFGGKYVRVLP 463


>SB_18495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -2

Query: 208 NHHGLLMHHFCLLRQSLSAPSRYSTKVLYQIKLKDYAVDARIV 80
           NH   L+ HFCL+  SL   S+ +  +   + + D +++ +IV
Sbjct: 163 NHAEKLLQHFCLMFSSLYPASKETINIHSLVNICDDSIELQIV 205


>SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 457 GESLRTCHS*LRIQEPHRNIYQQRWQSNF 543
           G + RT H+  + +E HR + Q++W+ N+
Sbjct: 622 GRTFRTMHTLEKHKESHRIVEQEKWKCNW 650


>SB_24560| Best HMM Match : Ank (HMM E-Value=0)
          Length = 248

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +1

Query: 412 CHMKNENLTC*YFG-EGESLRTCHS*LRIQEPHRNIYQQRWQSNFPYHWKAERCS 573
           C+MKN    C +   EG++L T  + L       N+Y +  Q   P H+ +E C+
Sbjct: 148 CNMKN----CLHLAVEGDNLDTLKTLLEHTGCEENLYTRDIQERVPLHYASESCN 198


>SB_21973| Best HMM Match : XPG_N (HMM E-Value=0.013)
          Length = 611

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = +2

Query: 107 FQFDLIQYFCTVTTRRGQGLPEETKMMHQQSMMVGDVIPVHPD-VPMHVEEMNNVGYENN 283
           F FDL   F  +T+      P  TK+  +Q M   D + + PD +P+    + N   +  
Sbjct: 159 FSFDLPGGFIRLTSLHWHSFPLSTKLYSRQKM--ADYLQLRPDLMPLFASVLGN---DFV 213

Query: 284 VSFAYDDLFPALPHSQPLGAT 346
            S A +  + A+P +   G +
Sbjct: 214 SSSAVEPFYTAIPRNHKGGGS 234


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,654,959
Number of Sequences: 59808
Number of extensions: 466829
Number of successful extensions: 995
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)