Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_F08
         (845 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical pr...    49   5e-06

>Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical
           protein C08H9.2 protein.
          Length = 1220

 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 45/146 (30%), Positives = 64/146 (43%), Gaps = 13/146 (8%)
 Frame = +2

Query: 245 HVEEMNNVGYENN-----VSFAYDDLFPALPHSQPLGAT*YTTGYKQTSSWLFTAHSSFP 409
           H+EE NNV  +       +SF+Y   FP LP + P  A       KQT  W     S   
Sbjct: 5   HIEETNNVEIDPATGGAVMSFSYASDFPTLPDAAPASAP----TAKQTHVWSRPTLSKSE 60

Query: 410 CAI*--------RTKT*HANTLVRENP*ELAIHN*GYRSHIEISTSKDGSLTFLITGKQS 565
             I           K     +   E+    AI     ++ IE+S SKDG LT ++ G+++
Sbjct: 61  VNITFRLASDERSNKVKSFGSTSEESKKAQAIAT-ATKTRIELSESKDGELTVVVKGERA 119

Query: 566 AVLXARRQILTHFQQQASNQXSIPKE 643
               AR +I+   Q QAS +  IPK+
Sbjct: 120 KAEEARARIIRDLQTQASREIDIPKD 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,883,867
Number of Sequences: 27780
Number of extensions: 356468
Number of successful extensions: 850
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)