Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_F08
         (845 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00330.1 68417.m00042 protein kinase family protein contains ...    30   2.2  
At1g06250.1 68414.m00661 lipase class 3 family protein similar t...    29   2.9  
At2g28810.1 68415.m03503 Dof-type zinc finger domain-containing ...    28   6.8  
At1g29720.1 68414.m03633 protein kinase family protein contains ...    28   9.0  

>At4g00330.1 68417.m00042 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 411

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -1

Query: 338 QGAGNAAMLEIGHRRQMTHCSHIQHYSFLQHAWVHQDERV 219
           QGA    M EI    Q+TH S +++Y F+    VH DE++
Sbjct: 158 QGADAEFMSEIQTLAQVTHLSLVKYYGFV----VHNDEKI 193


>At1g06250.1 68414.m00661 lipase class 3 family protein similar to
           lipase GB:AAD01804 GI:4103627 from [Dianthus
           caryophyllus]; contains Pfam profile PF01764: Lipase
          Length = 423

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
 Frame = +2

Query: 158 QGLPEETKMMHQQSMMVGDVIPVHPDVP---MHVEEMNNVGYE 277
           +G+P+  K++  Q+   G + P+ PD+    +H  EM+ VGY+
Sbjct: 3   EGIPKRWKVLSGQNKWKGLLDPLDPDLRRYIIHYGEMSQVGYD 45


>At2g28810.1 68415.m03503 Dof-type zinc finger domain-containing
           protein similar to zinc finger protein OBP2 GI:5059394
           from [Arabidopsis thaliana]
          Length = 340

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 244 HGYIRMNGYHISNHHGLLMHHF 179
           H  ++ NG  +S HH +L HHF
Sbjct: 28  HHQLQENGSLVSGHHQVLSHHF 49


>At1g29720.1 68414.m03633 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 300

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/51 (23%), Positives = 27/51 (52%)
 Frame = +2

Query: 83  DPGVYGVIFQFDLIQYFCTVTTRRGQGLPEETKMMHQQSMMVGDVIPVHPD 235
           DPG+YG  +    ++   T ++    G+ ++T    + S+   D+ P++P+
Sbjct: 235 DPGIYGHDWSISKLRDIDTHSSSSTSGVTDQTTTTMKSSVSGCDLYPLYPE 285


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,932,622
Number of Sequences: 28952
Number of extensions: 328688
Number of successful extensions: 795
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)