Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_F07
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.02c |||ELLA family acetyltransferase |Schizosaccharomyc...    27   3.5  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    26   6.2  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    26   8.2  

>SPAC11D3.02c |||ELLA family acetyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 150

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 251 GYGKKEMIEKVEDPKALFEKAQAFVKSKLSEVQ 349
           GYG+K M++ +E  K  F  ++ FV S     Q
Sbjct: 89  GYGRKLMLQALETSKQEFSSSKTFVLSSQEYAQ 121


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 93  SCILKIYRMGFFFSIVKTSIIFG 161
           +C +++YR GF+ SI  T ++ G
Sbjct: 386 TCPVRVYRDGFWTSISSTDLVIG 408


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = +3

Query: 36  LRFILEIIRKM----S*TTPKDISCILKIYRMGFFFSIVKTSIIF 158
           +RF+ E IR +    S    K++S ILKI  +G F   V+  +IF
Sbjct: 539 MRFMKEAIRNIEILNSQGKDKELSNILKIVYLGIFSQNVQIQLIF 583


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,633,315
Number of Sequences: 5004
Number of extensions: 27127
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)