Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_F07
         (883 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0126 - 947072-948687,949454-949627,950117-951572                 30   2.1  
03_03_0181 + 15162681-15162806,15164026-15164172,15164269-151643...    30   2.8  

>07_01_0126 - 947072-948687,949454-949627,950117-951572
          Length = 1081

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = -3

Query: 476 HSLNCIYYTIIVKLIINMYKQLITILFHNSCSHFPNFNLFFHLVLQKVLISRKL 315
           HSL      ++  + + +    + ++F NSC H        HL+L K L  R++
Sbjct: 696 HSLQEQLQQVVGSIEVTLEDMSVFVMFLNSCPHLCRQPYSMHLLLDKCLFGRQM 749


>03_03_0181 +
           15162681-15162806,15164026-15164172,15164269-15164355,
           15165659-15165793,15165883-15165987,15166079-15166170,
           15166259-15166364,15166463-15166549,15166653-15167084
          Length = 438

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -3

Query: 161 TKYYRGFNDRKEKAHSIYFQNTRNIFWCCSRHFSYYFQNKS 39
           T Y    N R  K+  ++FQ  RN+ W  S+H  Y  QN S
Sbjct: 101 TFYDFHLNTRLVKSTIVHFQ-LRNLLWATSKHDVYLMQNYS 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,186,129
Number of Sequences: 37544
Number of extensions: 154677
Number of successful extensions: 364
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)