Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_F07
         (883 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56477| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_10439| Best HMM Match : Metallothio_7 (HMM E-Value=3.6)             28   8.7  

>SB_56477| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +3

Query: 159 GAGVYTGVYV--AQNYQDAVQVICQKSVQNCD 248
           G   YTG Y   A+  Q A Q +CQ+S+Q CD
Sbjct: 28  GYNGYTGYYKKRAKEAQAAQQALCQRSLQYCD 59


>SB_10439| Best HMM Match : Metallothio_7 (HMM E-Value=3.6)
          Length = 288

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 161 CRSLHRCLCSTKLSGCSPS 217
           C +++ C CS  L+GC+PS
Sbjct: 265 CVTMNGCACSVTLNGCAPS 283


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,882,575
Number of Sequences: 59808
Number of extensions: 188402
Number of successful extensions: 591
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2514529411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)