Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_F07
         (883 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78070.2 68414.m09098 WD-40 repeat family protein contains Pf...    29   3.1  
At1g78070.1 68414.m09097 WD-40 repeat family protein contains Pf...    29   3.1  
At3g44990.1 68416.m04847 xyloglucan:xyloglucosyl transferase, pu...    29   4.1  
At1g36070.1 68414.m04484 WD-40 repeat family protein contains 2 ...    29   4.1  

>At1g78070.2 68414.m09098 WD-40 repeat family protein contains Pfam
           profile PF00400: WD domain, G-beta repeat
          Length = 447

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 143 FNDRKEKAHSIYFQNTRNIFWCCSRHFSYYFQNKS 39
           FN R  K+   +FQ  RN+ W  S+H  Y+  N S
Sbjct: 122 FNTRLVKSTIAHFQ-LRNLVWATSKHDVYFMNNYS 155


>At1g78070.1 68414.m09097 WD-40 repeat family protein contains Pfam
           profile PF00400: WD domain, G-beta repeat
          Length = 229

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 143 FNDRKEKAHSIYFQNTRNIFWCCSRHFSYYFQNKS 39
           FN R  K+   +FQ  RN+ W  S+H  Y+  N S
Sbjct: 122 FNTRLVKSTIAHFQ-LRNLVWATSKHDVYFMNNYS 155


>At3g44990.1 68416.m04847 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative
          Length = 293

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 102 LKIYRMGFFFSIVKTSIIFGAGVYTGVYVAQNYQ 203
           L+ YR G+F + +K    F AGV T +Y++ N +
Sbjct: 74  LRPYRSGYFGASIKLQPGFTAGVDTSLYLSNNQE 107


>At1g36070.1 68414.m04484 WD-40 repeat family protein contains 2
           WD-40 repeats (PF0400);similar to guanine
           nucleotide-binding protein beta subunit GPBA (SP:P36408)
           [Dictyostelium discoideum (Slime mold)]; similar to
           katanin p80 (WD40-containing) subunit B 1 (GI:12655011)
           [Homo sapiens]
          Length = 418

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 143 FNDRKEKAHSIYFQNTRNIFWCCSRHFSYYFQNKS 39
           FN R   +  ++FQ  RN+ W  S+H  Y  QN S
Sbjct: 91  FNTRLVTSTIVHFQ-LRNLVWATSKHDVYLMQNYS 124


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,449,910
Number of Sequences: 28952
Number of extensions: 142246
Number of successful extensions: 323
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2077687200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)