Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_F06
         (982 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal pr...    81   2e-15
AF040645-9|AAB94972.2|  197|Caenorhabditis elegans Hypothetical ...    30   2.9  
Z83129-7|CAB05644.1|  256|Caenorhabditis elegans Hypothetical pr...    29   5.1  
AL021508-1|CAA16431.1|  170|Caenorhabditis elegans Hypothetical ...    29   5.1  

>AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 28 protein.
          Length = 65

 Score = 80.6 bits (190), Expect = 2e-15
 Identities = 41/54 (75%), Positives = 46/54 (85%), Gaps = 1/54 (1%)
 Frame = +3

Query: 96  MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIG-ETSRQIIRNVKGPVRDGDILT 254
           MDK   LARV KV+GRTGSQGQCTQV+VEFI  + +R IIRNVKGPVR+GDILT
Sbjct: 1   MDKLT-LARVTKVIGRTGSQGQCTQVRVEFINDQNNRSIIRNVKGPVREGDILT 53


>AF040645-9|AAB94972.2|  197|Caenorhabditis elegans Hypothetical
           protein F52C6.3 protein.
          Length = 197

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 196 PAVRSSET*KDPSVTETSSLFLNLNVKLGGCDRLLQHYCIRL 321
           P   S E  +DP   E+S +  NLNVK+    + L H  IR+
Sbjct: 64  PLRESEEVTEDPISVESSEVIGNLNVKVAETQQELHHEGIRI 105


>Z83129-7|CAB05644.1|  256|Caenorhabditis elegans Hypothetical
           protein W06G6.12 protein.
          Length = 256

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 29  EFLRFELWCTCAYCIKLDITSQNG*TQRSCSCRESA 136
           ++L F  W  CAY +   ++SQ   T  +C+CR  A
Sbjct: 113 KYLVFAHWECCAYWVSKRMSSQEHHTCPNCNCRVKA 148


>AL021508-1|CAA16431.1|  170|Caenorhabditis elegans Hypothetical
           protein Y70C5B.1 protein.
          Length = 170

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 29  EFLRFELWCTCAYCIKLDITSQNG*TQRSCSCRESA 136
           ++L F  W  CAY +   ++SQ   T  +C+CR  A
Sbjct: 27  KYLVFAHWECCAYWVSKRMSSQEHHTCPNCNCRVKA 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,436,613
Number of Sequences: 27780
Number of extensions: 172272
Number of successful extensions: 384
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2552786072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)