Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_F05
(935 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 111 5e-25
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 109 3e-24
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 98 6e-21
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 84 1e-16
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 81 1e-15
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 64 1e-10
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 62 7e-10
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 55 6e-08
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 51 1e-06
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 51 1e-06
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 51 1e-06
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 51 1e-06
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 51 1e-06
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 50 3e-06
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 48 7e-06
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 48 7e-06
At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein... 40 0.002
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 39 0.005
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 39 0.005
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 38 0.007
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.007
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.007
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 38 0.010
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 37 0.017
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 36 0.051
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein... 35 0.067
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 35 0.067
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 35 0.089
At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein... 33 0.21
At4g19130.1 68417.m02823 replication protein-related similar to ... 33 0.27
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 33 0.27
At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)... 33 0.27
At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar ... 33 0.36
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 32 0.48
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 32 0.63
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein... 31 0.83
At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PS... 31 0.83
At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein... 31 0.83
At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identic... 31 1.1
At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identic... 31 1.1
At3g31950.1 68416.m04046 hypothetical protein 31 1.1
At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak sim... 31 1.1
At5g08730.1 68418.m01037 IBR domain-containing protein contains ... 31 1.5
At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina... 31 1.5
At5g51300.2 68418.m06360 splicing factor-related contains simila... 30 1.9
At5g51300.1 68418.m06359 splicing factor-related contains simila... 30 1.9
At5g47430.1 68418.m05844 expressed protein 30 1.9
At5g47390.1 68418.m05840 myb family transcription factor contain... 30 1.9
At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein... 30 1.9
At4g39960.1 68417.m05660 DNAJ heat shock family protein similar ... 30 1.9
At4g17410.1 68417.m02607 expressed protein 30 1.9
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein... 30 1.9
At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger) fa... 30 1.9
At3g16350.1 68416.m02068 myb family transcription factor ; conta... 30 1.9
At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PS... 30 1.9
At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PS... 30 1.9
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 30 2.5
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s... 29 3.4
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 29 3.4
At2g16690.1 68415.m01915 hypothetical protein similar to zinc fi... 29 3.4
At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains... 29 3.4
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain... 29 3.4
At5g61670.2 68418.m07738 expressed protein 29 4.4
At5g61670.1 68418.m07737 expressed protein 29 4.4
At2g41570.1 68415.m05137 hypothetical protein similar to zinc fi... 29 4.4
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 29 4.4
At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical ... 29 5.9
At5g21140.1 68418.m02524 expressed protein 29 5.9
At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar ... 29 5.9
At5g06130.1 68418.m00681 chaperone protein dnaJ-related similar ... 29 5.9
At4g06479.1 68417.m00885 hypothetical protein 29 5.9
At2g38560.1 68415.m04737 transcription factor S-II (TFIIS) domai... 29 5.9
At2g31850.1 68415.m03889 expressed protein 29 5.9
At2g07740.1 68415.m01002 zinc knuckle (CCHC-type) family protein... 29 5.9
At4g30200.3 68417.m04295 expressed protein contains weak similar... 28 7.7
At4g30200.2 68417.m04294 expressed protein contains weak similar... 28 7.7
At4g30200.1 68417.m04293 expressed protein contains weak similar... 28 7.7
At3g07650.2 68416.m00917 zinc finger (B-box type) family protein... 28 7.7
At3g07650.1 68416.m00916 zinc finger (B-box type) family protein... 28 7.7
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 111 bits (268), Expect = 5e-25
Identities = 57/164 (34%), Positives = 75/164 (45%), Gaps = 31/164 (18%)
Frame = +3
Query: 222 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA---------- 371
CY C TGHFAR+CT G + + C+ C GH ARDC +++
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAV 193
Query: 372 ----DRCYRCNGTGHIARECAQ----------SPDEPSCYNCNKTGHIARNCPEGGRESA 509
D CY C GH AR+C Q +CY+C GHIAR+C +
Sbjct: 194 KGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDC--ATKRQP 251
Query: 510 TQTCYNCNKSGHISRNCPD-------GTKTCYVCGKPGHISREC 620
++ CY C SGH++R+C CY CGK GH +REC
Sbjct: 252 SRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFAREC 295
Score = 109 bits (261), Expect = 3e-24
Identities = 60/171 (35%), Positives = 79/171 (46%), Gaps = 34/171 (19%)
Frame = +3
Query: 216 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC------------ 359
S CY C GH +++C GG +R E C+ C TGHFARDC
Sbjct: 100 SGCYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGAT 159
Query: 360 KEEADRCYRCNGTGHIARECAQSP------------DEPSCYNCNKTGHIARNCPE---- 491
K D CY C GH+AR+C Q CY C GH AR+C +
Sbjct: 160 KGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAA 219
Query: 492 GGRES---ATQTCYNCNKSGHISRNCP---DGTKTCYVCGKPGHISRECDE 626
G S + TCY+C GHI+R+C ++ CY CG GH++R+CD+
Sbjct: 220 GNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDCDQ 270
Score = 58.8 bits (136), Expect = 5e-09
Identities = 35/97 (36%), Positives = 46/97 (47%), Gaps = 30/97 (30%)
Frame = +3
Query: 222 CYKCNRTGHFARECTQ--------------------GGV--VSRDSGFNRQREK-CFKCN 332
CY C GHFAR+CTQ GGV ++RD RQ + C++C
Sbjct: 200 CYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCG 259
Query: 333 RTGHFARDCKEEA-------DRCYRCNGTGHIARECA 422
+GH ARDC + + CY+C GH AREC+
Sbjct: 260 GSGHLARDCDQRGSGGGGNDNACYKCGKEGHFARECS 296
Score = 52.0 bits (119), Expect = 5e-07
Identities = 22/50 (44%), Positives = 28/50 (56%)
Frame = +3
Query: 222 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA 371
CY+C +GH AR+C Q G SG C+KC + GHFAR+C A
Sbjct: 255 CYQCGGSGHLARDCDQRG-----SGGGGNDNACYKCGKEGHFARECSSVA 299
Score = 35.1 bits (77), Expect = 0.067
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 210 SSSVCYKCNRTGHFARECT 266
+ + CYKC + GHFAREC+
Sbjct: 278 NDNACYKCGKEGHFARECS 296
Score = 29.5 bits (63), Expect = 3.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 567 GTKTCYVCGKPGHISREC 620
G CY CG+ GHIS++C
Sbjct: 98 GGSGCYNCGELGHISKDC 115
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 109 bits (261), Expect = 3e-24
Identities = 59/168 (35%), Positives = 77/168 (45%), Gaps = 35/168 (20%)
Frame = +3
Query: 222 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK------------- 362
CY C GHFAR+C Q G + G R C+ C GH A+DC+
Sbjct: 132 CYMCGDVGHFARDCRQSGGGNSGGGGGGGR-PCYSCGEVGHLAKDCRGGSGGNRYGGGGG 190
Query: 363 --EEADRCYRCNGTGHIARECAQS------PDEPSCYNCNKTGHIARNC----PEGGRES 506
D CY C G GH AR+C Q+ +CY C GHIA+ C P GG
Sbjct: 191 RGSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGG-GG 249
Query: 507 ATQTCYNCNKSGHISRNCP----------DGTKTCYVCGKPGHISREC 620
+ CY C +GH++R+C G+ C++CGK GH +REC
Sbjct: 250 GGRACYECGGTGHLARDCDRRGSGSSGGGGGSNKCFICGKEGHFAREC 297
Score = 94.7 bits (225), Expect = 8e-20
Identities = 55/177 (31%), Positives = 76/177 (42%), Gaps = 39/177 (22%)
Frame = +3
Query: 210 SSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQ---REKCFKCNRTGHFARDCKEEAD- 374
S C+ C GH A++C G G S G R+ +C+ C GHFARDC++
Sbjct: 92 SGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGG 151
Query: 375 ----------RCYRCNGTGHIAREC-------------AQSPDEPSCYNCNKTGHIARNC 485
CY C GH+A++C + CY C GH AR+C
Sbjct: 152 NSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDC 211
Query: 486 PEGGRES---ATQTCYNCNKSGHISRNCPD--------GTKTCYVCGKPGHISRECD 623
+ G + TCY C GHI++ C G + CY CG GH++R+CD
Sbjct: 212 RQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHLARDCD 268
Score = 75.4 bits (177), Expect = 5e-14
Identities = 52/156 (33%), Positives = 64/156 (41%), Gaps = 43/156 (27%)
Frame = +3
Query: 282 SRDSGFNRQREKCFKCNRTGHFARDCKEEA----------------DRCYRCNGTGHIAR 413
SR SG N CF C GH A+DC + CY C GH AR
Sbjct: 89 SRGSGGN-----CFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFAR 143
Query: 414 ECAQSPDEPS---------CYNCNKTGHIARNC----------PEGGRESATQTCYNCNK 536
+C QS S CY+C + GH+A++C GGR S CY C
Sbjct: 144 DCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGG 203
Query: 537 SGHISRNCPD--------GTKTCYVCGKPGHISREC 620
GH +R+C G TCY CG GHI++ C
Sbjct: 204 VGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVC 239
Score = 55.6 bits (128), Expect = 4e-08
Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Frame = +3
Query: 216 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEE--------- 368
S CY C GH A+ CT + S G R C++C TGH ARDC
Sbjct: 224 STCYTCGGVGHIAKVCTSK-IPSGGGGGGRA---CYECGGTGHLARDCDRRGSGSSGGGG 279
Query: 369 -ADRCYRCNGTGHIAREC 419
+++C+ C GH AREC
Sbjct: 280 GSNKCFICGKEGHFAREC 297
Score = 54.8 bits (126), Expect = 8e-08
Identities = 24/50 (48%), Positives = 29/50 (58%)
Frame = +3
Query: 222 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA 371
CY+C TGH AR+C + G S SG KCF C + GHFAR+C A
Sbjct: 254 CYECGGTGHLARDCDRRG--SGSSGGGGGSNKCFICGKEGHFARECTSVA 301
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +3
Query: 441 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 620
+C+NC + GH+A++C +GG + +SG G CY+CG GH +R+C
Sbjct: 95 NCFNCGEVGHMAKDC-DGGSGGKSFGGGGGRRSG--------GEGECYMCGDVGHFARDC 145
Query: 621 DEA 629
++
Sbjct: 146 RQS 148
Score = 32.3 bits (70), Expect = 0.48
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 213 SSVCYKCNRTGHFARECT 266
S+ C+ C + GHFARECT
Sbjct: 281 SNKCFICGKEGHFARECT 298
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 98.3 bits (234), Expect = 6e-21
Identities = 49/136 (36%), Positives = 70/136 (51%), Gaps = 1/136 (0%)
Frame = +3
Query: 216 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNG 395
++C C R GHFAR+C+ V C C GH A +C E+ RC+ C
Sbjct: 55 NLCNNCKRPGHFARDCSNVSV-------------CNNCGLPGHIAAECTAES-RCWNCRE 100
Query: 396 TGHIARECAQSPDEPSCYNCNKTGHIARNCPEG-GRESATQTCYNCNKSGHISRNCPDGT 572
GH+A C+ +E C++C K+GH AR+C R + C NC K GH++ +C +
Sbjct: 101 PGHVASNCS---NEGICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADCTN-D 156
Query: 573 KTCYVCGKPGHISREC 620
K C C GHI+R+C
Sbjct: 157 KACKNCRTSGHIARDC 172
Score = 85.4 bits (202), Expect = 5e-17
Identities = 43/111 (38%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Frame = +3
Query: 306 QREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 485
Q C C R GHFARDC C C GHIA EC E C+NC + GH+A NC
Sbjct: 53 QGNLCNNCKRPGHFARDCSN-VSVCNNCGLPGHIAAECTA---ESRCWNCREPGHVASNC 108
Query: 486 PEGGRESATQTCYNCNKSGHISRNCPDG------TKTCYVCGKPGHISREC 620
G C++C KSGH +R+C + + C C K GH++ +C
Sbjct: 109 SNEG------ICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADC 153
Score = 82.6 bits (195), Expect = 3e-16
Identities = 51/149 (34%), Positives = 76/149 (51%), Gaps = 8/149 (5%)
Frame = +3
Query: 210 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRC 389
+ +C+ C ++GH AR+C+ SR +G R CFK GH A DC + C C
Sbjct: 110 NEGICHSCGKSGHRARDCSNSD--SR-AGDLRLCNNCFK---QGHLAADCTND-KACKNC 162
Query: 390 NGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG---RESATQTCYNCNKSGHISRNC 560
+GHIAR+C ++P C C+ +GH+AR+CP+G + ++ + G +SR
Sbjct: 163 RTSGHIARDCR---NDPVCNICSISGHVARHCPKGDSNYSDRGSRVRDGGMQRGGLSRMS 219
Query: 561 PD--GTKT---CYVCGKPGHISRECDEAR 632
D G C+ CG GH + EC AR
Sbjct: 220 RDREGVSAMIICHNCGGRGHRAYECPSAR 248
Score = 79.0 bits (186), Expect = 4e-15
Identities = 47/130 (36%), Positives = 61/130 (46%), Gaps = 12/130 (9%)
Frame = +3
Query: 216 SVCYKCNRTGHFARECTQGGVV--SRDSGF---NRQREK-CFKCNRTGHFARDCKEEADR 377
SVC C GH A ECT R+ G N E C C ++GH ARDC R
Sbjct: 74 SVCNNCGLPGHIAAECTAESRCWNCREPGHVASNCSNEGICHSCGKSGHRARDCSNSDSR 133
Query: 378 ------CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 539
C C GH+A +C ++ +C NC +GHIAR+C C C+ S
Sbjct: 134 AGDLRLCNNCFKQGHLAADCT---NDKACKNCRTSGHIARDCRN------DPVCNICSIS 184
Query: 540 GHISRNCPDG 569
GH++R+CP G
Sbjct: 185 GHVARHCPKG 194
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 83.8 bits (198), Expect = 1e-16
Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 18/145 (12%)
Frame = +3
Query: 312 EKCFKCNRTGHFARDCKEEADR-----CYRCNGTGHIARECAQSPDEPS----CYNCNKT 464
E CF C+ H A+ C E+++ C +C GH + C + +E S CYNC T
Sbjct: 74 EGCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDT 133
Query: 465 GHIARNCPEGGRESATQ--TCYNCNKSGHISRNCPDGTK-------TCYVCGKPGHISRE 617
GH +CP + T+ +C+ C GHIS+NCP+ C VCG H+ ++
Sbjct: 134 GHSLSHCPYPMEDGGTKFASCFICKGQGHISKNCPENKHGIYPMGGCCKVCGSVAHLVKD 193
Query: 618 CDEARN*PQPPCSPLQSTMYIMMPR 692
C + N Q P +++ + PR
Sbjct: 194 CPDKFN--QESAQPKKTSRFDATPR 216
Score = 58.0 bits (134), Expect = 8e-09
Identities = 35/119 (29%), Positives = 49/119 (41%), Gaps = 7/119 (5%)
Frame = +3
Query: 285 RDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRC-NGTGHIARECAQSPDEPSCYNCNK 461
+D ++++ FK + G DR R + T H R P E C+ C+
Sbjct: 30 KDPNKKKKKKSLFKKKKPG-------SSTDRPQRTGSSTRHPLRVPGMKPGE-GCFICHS 81
Query: 462 TGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGT------KTCYVCGKPGHISREC 620
HIA+ CPE + C C + GH +NCP+ K CY CG GH C
Sbjct: 82 KTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHC 140
Score = 54.4 bits (125), Expect = 1e-07
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 12/113 (10%)
Frame = +3
Query: 213 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD------ 374
+ +C +C R GH + C + + + +++ C+ C TGH C +
Sbjct: 98 NKICLQCRRRGHSLKNCPE------KNNESSEKKLCYNCGDTGHSLSHCPYPMEDGGTKF 151
Query: 375 -RCYRCNGTGHIARECAQS-----PDEPSCYNCNKTGHIARNCPEGGRESATQ 515
C+ C G GHI++ C ++ P C C H+ ++CP+ + + Q
Sbjct: 152 ASCFICKGQGHISKNCPENKHGIYPMGGCCKVCGSVAHLVKDCPDKFNQESAQ 204
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 80.6 bits (190), Expect = 1e-15
Identities = 47/145 (32%), Positives = 69/145 (47%), Gaps = 14/145 (9%)
Frame = +3
Query: 204 AMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQRE---KCFKCNRTGHFARDCKEEAD 374
A + + CYKC + GH+AR+CT V D+G + CFKC + GH++RDC ++
Sbjct: 233 AKTGTPCYKCGKEGHWARDCT----VQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQS- 287
Query: 375 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP--------EGGR---ESATQTC 521
+ + S CY C K GH +R+C + G+ S+T C
Sbjct: 288 -----GNPKYEPGQMKSSSSSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDC 342
Query: 522 YNCNKSGHISRNCPDGTKTCYVCGK 596
Y C K+GH SR+C +T GK
Sbjct: 343 YKCGKAGHWSRDCTSPAQTTNTPGK 367
Score = 48.0 bits (109), Expect = 9e-06
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
Frame = +3
Query: 438 PSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCPDGTKT-----------C 581
P+ Y+ K + + G + + T T CY C K GH +R+C + T C
Sbjct: 211 PTSYSVTKNSNFGDSDTRGYQNAKTGTPCYKCGKEGHWARDCTVQSDTGPVKSTSAAGDC 270
Query: 582 YVCGKPGHISREC 620
+ CGKPGH SR+C
Sbjct: 271 FKCGKPGHWSRDC 283
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 64.5 bits (150), Expect = 1e-10
Identities = 41/142 (28%), Positives = 56/142 (39%), Gaps = 7/142 (4%)
Frame = +3
Query: 171 VLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFA 350
+L E+SK + CY C GH C + G C++C + GH
Sbjct: 247 ILCKYEYSKE-DLKDVQCYICKSFGHLC--CVEPG------NSLSWAVSCYRCGQLGHSG 297
Query: 351 RDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG-------GRESA 509
C + + S + CY C + GH AR CP GRES
Sbjct: 298 LACGRHYEESNENDSA--TPERLFNSREASECYRCGEEGHFARECPNSSSISTSHGRESQ 355
Query: 510 TQTCYNCNKSGHISRNCPDGTK 575
T CY CN SGH +R CP+ ++
Sbjct: 356 T-LCYRCNGSGHFARECPNSSQ 376
Score = 63.7 bits (148), Expect = 2e-10
Identities = 56/220 (25%), Positives = 77/220 (35%), Gaps = 38/220 (17%)
Frame = +3
Query: 75 DGGWLPCYRSVINYNLFVNS*DN*SLNDRYISVLSAQEFSKPIAMSSSVCYKCNRTGHFA 254
D GW+ CY + N + + + + E CY C +TGH A
Sbjct: 162 DAGWVSCYSCGEQGHTSFNC-PTPTKRRKPCFICGSLEHGAKQCSKGHDCYICKKTGHRA 220
Query: 255 RECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR-------CYRCNGTGHIAR 413
++C +G + C +C GH CK E + CY C GH+
Sbjct: 221 KDCPD----KYKNG--SKGAVCLRCGDFGHDMILCKYEYSKEDLKDVQCYICKSFGHL-- 272
Query: 414 ECAQSPDEP-----SCYNCNKTGHIARNC-----PEGGRESAT----------QTCYNCN 533
C P SCY C + GH C +SAT CY C
Sbjct: 273 -CCVEPGNSLSWAVSCYRCGQLGHSGLACGRHYEESNENDSATPERLFNSREASECYRCG 331
Query: 534 KSGHISRNCPDGTKT-----------CYVCGKPGHISREC 620
+ GH +R CP+ + CY C GH +REC
Sbjct: 332 EEGHFARECPNSSSISTSHGRESQTLCYRCNGSGHFAREC 371
Score = 58.8 bits (136), Expect = 5e-09
Identities = 26/77 (33%), Positives = 38/77 (49%)
Frame = +3
Query: 213 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCN 392
+S CY+C GHFAREC +S G + C++CN +GHFAR+C + R
Sbjct: 324 ASECYRCGEEGHFARECPNSSSISTSHG-RESQTLCYRCNGSGHFARECPNSSQVSKRDR 382
Query: 393 GTGHIARECAQSPDEPS 443
T + + + E S
Sbjct: 383 ETSTTSHKSRKKNKENS 399
Score = 54.0 bits (124), Expect = 1e-07
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +3
Query: 441 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 620
SCY+C + GH + NCP + + C+ C H ++ C G CY+C K GH +++C
Sbjct: 167 SCYSCGEQGHTSFNCPTPTKR--RKPCFICGSLEHGAKQCSKG-HDCYICKKTGHRAKDC 223
Query: 621 -DEARN 635
D+ +N
Sbjct: 224 PDKYKN 229
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +3
Query: 210 SSSVCYKCNRTGHFARECTQGGVVS-RDSGFNRQREKCFKCNR 335
S ++CY+CN +GHFAREC VS RD + K K N+
Sbjct: 354 SQTLCYRCNGSGHFARECPNSSQVSKRDRETSTTSHKSRKKNK 396
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 61.7 bits (143), Expect = 7e-10
Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Frame = +3
Query: 363 EEADRCYRCNGTGHIARECAQSPDEPS-----CYNCNKTGHIARNCPEGGR-ESATQTCY 524
+EA+ C RC G GH C CY CN GH+ C E G +S T +CY
Sbjct: 23 DEAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLC--CIEPGHTQSWTVSCY 80
Query: 525 NCNKSGHISRNC-----PDGTKTCYVCGKPGHISREC 620
C + GH C + +C++CG+ GH +C
Sbjct: 81 RCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQC 117
Score = 58.8 bits (136), Expect = 5e-09
Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 12/105 (11%)
Frame = +3
Query: 306 QREKCFKCNRTGHFARDCKEEAD-------RCYRCNGTGHIARECAQSPDEP-----SCY 449
+ E C +C GH CK E +CY CN GH+ C P SCY
Sbjct: 24 EAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHL---CCIEPGHTQSWTVSCY 80
Query: 450 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCY 584
C + GH C +S + +C+ C + GH C + C+
Sbjct: 81 RCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQCHNSFSVCF 125
Score = 50.8 bits (116), Expect = 1e-06
Identities = 40/143 (27%), Positives = 53/143 (37%), Gaps = 10/143 (6%)
Frame = +3
Query: 222 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 401
CY+C + GH C G DS CF C R GHF C C+ + +
Sbjct: 79 CYRCGQLGHTGLAC---GRHYDDS----VSPSCFICGREGHFEHQCHNSFSVCFPEDSSE 131
Query: 402 HIARECAQSPDEPSCYNCNKT-----GHIARNCPEGGRE-----SATQTCYNCNKSGHIS 551
EC Q PD S T GH CP+ S + + N S +
Sbjct: 132 D---EC-QGPDSSSVRFQENTREEEEGHFEHQCPDSSSVCFQEISREEGFISLNSSSKST 187
Query: 552 RNCPDGTKTCYVCGKPGHISREC 620
+ + CY C GHI+R+C
Sbjct: 188 SKGRETRRLCYECKGKGHIARDC 210
Score = 42.7 bits (96), Expect = 3e-04
Identities = 32/131 (24%), Positives = 44/131 (33%), Gaps = 10/131 (7%)
Frame = +3
Query: 222 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD-----RCYR 386
CY CN GH C + G C++C + GH C D C+
Sbjct: 55 CYVCNSLGHLC--CIEPGHT------QSWTVSCYRCGQLGHTGLACGRHYDDSVSPSCFI 106
Query: 387 CNGTGHIARECAQS-----PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHIS 551
C GH +C S P++ S C + E RE + GH
Sbjct: 107 CGREGHFEHQCHNSFSVCFPEDSSEDECQGPDSSSVRFQENTRE---------EEEGHFE 157
Query: 552 RNCPDGTKTCY 584
CPD + C+
Sbjct: 158 HQCPDSSSVCF 168
Score = 37.9 bits (84), Expect = 0.010
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Frame = +3
Query: 210 SSSVCYKCN----RTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR 377
SSSV ++ N GHF +C V +R+ E N + +E
Sbjct: 139 SSSVRFQENTREEEEGHFEHQCPDSSSVCFQE-ISRE-EGFISLNSSSKSTSKGRETRRL 196
Query: 378 CYRCNGTGHIARECAQS 428
CY C G GHIAR+C S
Sbjct: 197 CYECKGKGHIARDCPNS 213
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 147 SLNDRYISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVV 281
S + +IS+ S+ + + + +CY+C GH AR+C V
Sbjct: 172 SREEGFISLNSSSKSTSKGRETRRLCYECKGKGHIARDCPNSSQV 216
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 55.2 bits (127), Expect = 6e-08
Identities = 42/152 (27%), Positives = 60/152 (39%), Gaps = 12/152 (7%)
Frame = +3
Query: 237 RTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARE 416
+TG F++ ++ RD + QR K + AR E+ + + N R
Sbjct: 200 KTGLFSKRMK---IIHRDPVLHAQRVAAIKKAKGTPAARKHASESMKAFFSNPVNREQRS 256
Query: 417 CAQSPDEPSCYNCNKTGHIARNCPEGGRESATQ-TCYNCNKSGHISRNCP-------DGT 572
+ + C NC + GH CPE G + + C C GH R CP G
Sbjct: 257 LSMKGTKFYCKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKSIVTKGI 316
Query: 573 KT----CYVCGKPGHISRECDEARN*PQPPCS 656
T C +CG+ GH SR C + P CS
Sbjct: 317 STRYHKCGICGERGHNSRTCRKPTG-VNPSCS 347
Score = 40.7 bits (91), Expect = 0.001
Identities = 35/125 (28%), Positives = 46/125 (36%), Gaps = 11/125 (8%)
Frame = +3
Query: 222 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD--------- 374
C C + GH C + G + D F +C C GH R C +
Sbjct: 266 CKNCGQEGHRRHYCPELGT-NADRKF-----RCRGCGGKGHNRRTCPKSKSIVTKGISTR 319
Query: 375 --RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHI 548
+C C GH +R C + P+ N + +G N E G T C C K GH
Sbjct: 320 YHKCGICGERGHNSRTCRK----PTGVNPSCSGE---NSGEDGVGKITYACGFCKKMGHN 372
Query: 549 SRNCP 563
R CP
Sbjct: 373 VRTCP 377
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 50.8 bits (116), Expect = 1e-06
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 315 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 431
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 49.6 bits (113), Expect = 3e-06
Identities = 31/96 (32%), Positives = 48/96 (50%)
Frame = +3
Query: 429 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHI 608
P C+NC GH AR+C G ++ CY C + GHI RNC + + + + G
Sbjct: 96 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNCKN-SPSPKKARQGGSY 151
Query: 609 SRECDEARN*PQPPCSPLQSTMYIMMPRTDDKQRTP 716
SR ++R+ P+ SP +S Y R+ + R+P
Sbjct: 152 SRSPVKSRS-PRRRRSPSRSRSY-SRGRSYSRSRSP 185
Score = 47.6 bits (108), Expect = 1e-05
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +3
Query: 375 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 485
RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 136
Score = 41.5 bits (93), Expect = 8e-04
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +3
Query: 213 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 362
S C+ C GH+AR+CT G + KC++C GH R+CK
Sbjct: 98 SGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCK 137
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 549 SRNCPDGTKTCYVCGKPGHISREC 620
SR P G+ C+ CG GH +R+C
Sbjct: 91 SRGPPPGSGRCFNCGVDGHWARDC 114
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 50.8 bits (116), Expect = 1e-06
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 315 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 431
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
Score = 49.6 bits (113), Expect = 3e-06
Identities = 31/96 (32%), Positives = 48/96 (50%)
Frame = +3
Query: 429 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHI 608
P C+NC GH AR+C G ++ CY C + GHI RNC + + + + G
Sbjct: 55 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNCKN-SPSPKKARQGGSY 110
Query: 609 SRECDEARN*PQPPCSPLQSTMYIMMPRTDDKQRTP 716
SR ++R+ P+ SP +S Y R+ + R+P
Sbjct: 111 SRSPVKSRS-PRRRRSPSRSRSY-SRGRSYSRSRSP 144
Score = 47.6 bits (108), Expect = 1e-05
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +3
Query: 375 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 485
RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 95
Score = 41.5 bits (93), Expect = 8e-04
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +3
Query: 213 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 362
S C+ C GH+AR+CT G + KC++C GH R+CK
Sbjct: 57 SGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCK 96
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 549 SRNCPDGTKTCYVCGKPGHISREC 620
SR P G+ C+ CG GH +R+C
Sbjct: 50 SRGPPPGSGRCFNCGVDGHWARDC 73
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 50.8 bits (116), Expect = 1e-06
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 315 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 431
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
Score = 49.6 bits (113), Expect = 3e-06
Identities = 32/107 (29%), Positives = 50/107 (46%)
Frame = +3
Query: 429 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHI 608
P C+NC GH AR+C G ++ CY C + GHI RNC + K + G
Sbjct: 55 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPKK---LRRSGSY 108
Query: 609 SRECDEARN*PQPPCSPLQSTMYIMMPRTDDKQRTPRATHDNRLQYR 749
SR +R+ P+ SP +S + R+ + R+P + ++ R
Sbjct: 109 SRSPVRSRS-PRRRRSPSRS---LSRSRSYSRSRSPVRRRERSVEER 151
Score = 49.2 bits (112), Expect = 4e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +3
Query: 369 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 527
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 57 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 109
Score = 44.8 bits (101), Expect = 8e-05
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Frame = +3
Query: 462 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVCGKPGHISR 614
T +R P G R+ ++ C+NC GH +R+C D CY CG+ GHI R
Sbjct: 34 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 93
Query: 615 EC 620
C
Sbjct: 94 NC 95
Score = 41.9 bits (94), Expect = 6e-04
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 222 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYR 386
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 60 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 104
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 50.8 bits (116), Expect = 1e-06
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 315 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 431
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 70 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 110
Score = 49.6 bits (113), Expect = 3e-06
Identities = 32/107 (29%), Positives = 50/107 (46%)
Frame = +3
Query: 429 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHI 608
P C+NC GH AR+C G ++ CY C + GHI RNC + K + G
Sbjct: 66 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPKK---LRRSGSY 119
Query: 609 SRECDEARN*PQPPCSPLQSTMYIMMPRTDDKQRTPRATHDNRLQYR 749
SR +R+ P+ SP +S + R+ + R+P + ++ R
Sbjct: 120 SRSPVRSRS-PRRRRSPSRS---LSRSRSYSRSRSPVRRRERSVEER 162
Score = 49.2 bits (112), Expect = 4e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +3
Query: 369 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 527
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 68 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 120
Score = 44.8 bits (101), Expect = 8e-05
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Frame = +3
Query: 462 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVCGKPGHISR 614
T +R P G R+ ++ C+NC GH +R+C D CY CG+ GHI R
Sbjct: 45 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 104
Query: 615 EC 620
C
Sbjct: 105 NC 106
Score = 41.9 bits (94), Expect = 6e-04
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 222 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYR 386
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 71 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 115
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 50.8 bits (116), Expect = 1e-06
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 315 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 431
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 49.6 bits (113), Expect = 3e-06
Identities = 32/107 (29%), Positives = 50/107 (46%)
Frame = +3
Query: 429 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHI 608
P C+NC GH AR+C G ++ CY C + GHI RNC + K + G
Sbjct: 96 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPKK---LRRSGSY 149
Query: 609 SRECDEARN*PQPPCSPLQSTMYIMMPRTDDKQRTPRATHDNRLQYR 749
SR +R+ P+ SP +S + R+ + R+P + ++ R
Sbjct: 150 SRSPVRSRS-PRRRRSPSRS---LSRSRSYSRSRSPVRRRERSVEER 192
Score = 49.2 bits (112), Expect = 4e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +3
Query: 369 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 527
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 98 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 150
Score = 44.8 bits (101), Expect = 8e-05
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Frame = +3
Query: 462 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVCGKPGHISR 614
T +R P G R+ ++ C+NC GH +R+C D CY CG+ GHI R
Sbjct: 75 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 134
Query: 615 EC 620
C
Sbjct: 135 NC 136
Score = 41.9 bits (94), Expect = 6e-04
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 222 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYR 386
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 101 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 145
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 49.6 bits (113), Expect = 3e-06
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Frame = +3
Query: 432 DEPSCYNCNKTGHIARNCPEGGR-ESATQTCYNCNKSGHISRNCPDGTKT-------CYV 587
D +CY C K GH AR+C + +A TCY C++ GH S CP+ CY
Sbjct: 32 DPRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYW 91
Query: 588 CGKPGH 605
CG H
Sbjct: 92 CGNQDH 97
Score = 42.3 bits (95), Expect = 4e-04
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Frame = +3
Query: 378 CYRCNGTGHIAREC--AQSPDEP--SCYNCNKTGHIARNCPEGGRESATQT--CYNCNKS 539
CY+C GH AR C P +CY C++ GH + CP + CY C
Sbjct: 36 CYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYWCGNQ 95
Query: 540 GH 545
H
Sbjct: 96 DH 97
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Frame = +3
Query: 513 QTCYNCNKSGHISRNCPDGTK------TCYVCGKPGHISRECDEAR 632
+ CY C K GH +R+C T+ TCY C + GH S C R
Sbjct: 34 RACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKR 79
Score = 37.1 bits (82), Expect = 0.017
Identities = 21/61 (34%), Positives = 30/61 (49%)
Frame = +3
Query: 222 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 401
CYKC + GHFAR C VV++ + C+ C+ GH + C + R + N G
Sbjct: 36 CYKCGKLGHFARSC---HVVTQPT---TAYITCYFCSEEGHRSNGCPNK--RTDQVNPKG 87
Query: 402 H 404
H
Sbjct: 88 H 88
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 48.4 bits (110), Expect = 7e-06
Identities = 30/89 (33%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Frame = +3
Query: 270 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRC------------YRCNGTGHIAR 413
GG R G R C+KC GH ARDC E Y G G+
Sbjct: 116 GGYGGRGGG-GRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGG 174
Query: 414 ECAQSPDEPSCYNCNKTGHIARNCPEGGR 500
SCY+C ++GH AR+C GGR
Sbjct: 175 GRGGGGGGGSCYSCGESGHFARDCTSGGR 203
Score = 41.9 bits (94), Expect = 6e-04
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +3
Query: 216 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFA--RDCKEEADRCYRC 389
S CYKC GH AR+C++GG G + G+ R CY C
Sbjct: 129 SDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSC 188
Query: 390 NGTGHIAREC 419
+GH AR+C
Sbjct: 189 GESGHFARDC 198
Score = 41.1 bits (92), Expect = 0.001
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Frame = +3
Query: 444 CYNCNKTGHIARNCPEGGRESATQTC-------YNCNKSGHIS--RNCPDGTKTCYVCGK 596
CY C + GH+AR+C EGG Y G+ R G +CY CG+
Sbjct: 131 CYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSCGE 190
Query: 597 PGHISREC 620
GH +R+C
Sbjct: 191 SGHFARDC 198
Score = 37.5 bits (83), Expect = 0.013
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 222 CYKCNRTGHFARECTQGG 275
CY C +GHFAR+CT GG
Sbjct: 185 CYSCGESGHFARDCTSGG 202
Score = 35.1 bits (77), Expect = 0.067
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 567 GTKTCYVCGKPGHISRECDE 626
G CY CG+PGH++R+C E
Sbjct: 127 GGSDCYKCGEPGHMARDCSE 146
Score = 31.1 bits (67), Expect = 1.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 492 GGRESATQTCYNCNKSGHISRNCPDG 569
GG CY C + GH++R+C +G
Sbjct: 122 GGGGRGGSDCYKCGEPGHMARDCSEG 147
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 48.4 bits (110), Expect = 7e-06
Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Frame = +3
Query: 270 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP--S 443
GG S G CFKC GH AR+C + G G S
Sbjct: 122 GGRGSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLS 181
Query: 444 CYNCNKTGHIARNCPEGG 497
CY+C ++GH AR+C GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 47.2 bits (107), Expect = 2e-05
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = +3
Query: 378 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 557
C++C GH+AREC+Q Y+ G + GG +CY+C +SGH +R+
Sbjct: 138 CFKCGEPGHMARECSQGGGG---YSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARD 194
Query: 558 CPDG 569
C G
Sbjct: 195 CTSG 198
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 12/58 (20%)
Frame = +3
Query: 222 CYKCNRTGHFARECTQ-GGVVSRDSGFNRQRE-----------KCFKCNRTGHFARDC 359
C+KC GH AREC+Q GG S G R C+ C +GHFARDC
Sbjct: 138 CFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARDC 195
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = +3
Query: 441 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 620
SC+ C + GH+AR C +GG + SG G +CY CG+ GH +R+C
Sbjct: 137 SCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGG-GGGGGGGGLSCYSCGESGHFARDC 195
Score = 37.5 bits (83), Expect = 0.013
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 222 CYKCNRTGHFARECTQGG 275
CY C +GHFAR+CT GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 34.7 bits (76), Expect = 0.089
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 567 GTKTCYVCGKPGHISRECDE 626
G +C+ CG+PGH++REC +
Sbjct: 134 GDNSCFKCGEPGHMARECSQ 153
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +3
Query: 465 GHIARNCPEGGRESATQTCYNCNKSGHISRNCPDG 569
G+ R G +C+ C + GH++R C G
Sbjct: 120 GYGGRGSGGRGGGGGDNSCFKCGEPGHMARECSQG 154
>At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 260
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = +3
Query: 516 TCYNCNKSGHISRNCPDGT---KTCYVCGKPGHISREC 620
TCY+C + HI+ +CP T K+C++C H +R+C
Sbjct: 144 TCYSCGEKDHITVSCPTLTNCRKSCFICASLEHGARQC 181
Score = 28.3 bits (60), Expect = 7.7
Identities = 18/84 (21%), Positives = 26/84 (30%)
Frame = +3
Query: 384 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 563
+ I C + DE N + R E G ++ +
Sbjct: 85 KLEAANEIVTHCVERQDED-----NMVEDVVRGEEEDGETTSNSVMTKLLRGARYFDPLD 139
Query: 564 DGTKTCYVCGKPGHISRECDEARN 635
G TCY CG+ HI+ C N
Sbjct: 140 AGWVTCYSCGEKDHITVSCPTLTN 163
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +3
Query: 270 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD 374
GG SR G ++CFKC R GH+ARDC D
Sbjct: 104 GGYSSRGKG---TEDECFKCRRPGHWARDCPSTGD 135
Score = 31.5 bits (68), Expect = 0.83
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 222 CYKCNRTGHFARECTQGG 275
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 1.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 435 EPSCYNCNKTGHIARNCPEGG 497
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
Score = 30.7 bits (66), Expect = 1.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 339 GHFARDCKEEADRCYRCNGTGHIARECAQSPDE 437
G ++ K D C++C GH AR+C + D+
Sbjct: 104 GGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +3
Query: 270 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD 374
GG SR G ++CFKC R GH+ARDC D
Sbjct: 104 GGYSSRGKG---TEDECFKCRRPGHWARDCPSTGD 135
Score = 31.5 bits (68), Expect = 0.83
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 222 CYKCNRTGHFARECTQGG 275
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 1.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 435 EPSCYNCNKTGHIARNCPEGG 497
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
Score = 30.7 bits (66), Expect = 1.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 339 GHFARDCKEEADRCYRCNGTGHIARECAQSPDE 437
G ++ K D C++C GH AR+C + D+
Sbjct: 104 GGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 38.3 bits (85), Expect = 0.007
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 9/40 (22%)
Frame = +3
Query: 285 RDSGFNRQREK---------CFKCNRTGHFARDCKEEADR 377
RD G++R R + CFKC + GHFAR+C E+ R
Sbjct: 100 RDRGYDRDRSRPSGGRGGGDCFKCGKPGHFARECPSESSR 139
Score = 34.3 bits (75), Expect = 0.12
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +3
Query: 222 CYKCNRTGHFARECTQGGVVSRDSG 296
C+KC + GHFAREC SRD G
Sbjct: 120 CFKCGKPGHFARECPSES--SRDGG 142
Score = 33.1 bits (72), Expect = 0.27
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 567 GTKTCYVCGKPGHISREC 620
G C+ CGKPGH +REC
Sbjct: 116 GGGDCFKCGKPGHFAREC 133
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Frame = +3
Query: 444 CYNCNKTGHIARNCPE------GGRESATQTCYNCNKSGHISRNCPDGTK 575
C+ C K GH AR CP GGR S+ Y+ + +++ G K
Sbjct: 120 CFKCGKPGHFARECPSESSRDGGGRFSSKDDRYSSKDDRYGAKDDRYGAK 169
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.007
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 207 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 311
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 32.7 bits (71), Expect = 0.36
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 267 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 362
+GG R G + KC++C GHFAR+C+
Sbjct: 76 RGGGGGRRGGI--EDSKCYECGELGHFARECR 105
Score = 31.5 bits (68), Expect = 0.83
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +3
Query: 279 VSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 419
+ R +G+ + K R G R E +CY C GH AREC
Sbjct: 58 LDRKNGWRVELSHKDKGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
Score = 29.9 bits (64), Expect = 2.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 432 DEPSCYNCNKTGHIARNCPEG 494
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 29.9 bits (64), Expect = 2.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 579 CYVCGKPGHISRECDEAR 632
CY CG+ GH +REC R
Sbjct: 91 CYECGELGHFARECRRGR 108
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.007
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 207 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 311
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 32.7 bits (71), Expect = 0.36
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 267 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 362
+GG R G + KC++C GHFAR+C+
Sbjct: 76 RGGGGGRRGGI--EDSKCYECGELGHFARECR 105
Score = 31.5 bits (68), Expect = 0.83
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +3
Query: 279 VSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 419
+ R +G+ + K R G R E +CY C GH AREC
Sbjct: 58 LDRKNGWRVELSHKDKGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
Score = 29.9 bits (64), Expect = 2.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 432 DEPSCYNCNKTGHIARNCPEG 494
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 29.9 bits (64), Expect = 2.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 579 CYVCGKPGHISRECDEAR 632
CY CG+ GH +REC R
Sbjct: 91 CYECGELGHFARECRRGR 108
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 37.9 bits (84), Expect = 0.010
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +3
Query: 222 CYKCNRTGHFARECTQGGVVSRDSGFNRQR 311
CY+C TGHFAREC G R +R R
Sbjct: 101 CYECGETGHFARECRNRGGTGRRRSKSRSR 130
Score = 33.9 bits (74), Expect = 0.16
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +3
Query: 315 KCFKCNRTGHFARDCK 362
KC++C TGHFAR+C+
Sbjct: 100 KCYECGETGHFARECR 115
Score = 31.5 bits (68), Expect = 0.83
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 492 GGRESATQTCYNCNKSGHISRNC 560
GGR + CY C ++GH +R C
Sbjct: 92 GGRGGSDLKCYECGETGHFAREC 114
Score = 31.1 bits (67), Expect = 1.1
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 375 RCYRCNGTGHIAREC 419
+CY C TGH AREC
Sbjct: 100 KCYECGETGHFAREC 114
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 444 CYNCNKTGHIARNCPEGG 497
CY C +TGH AR C G
Sbjct: 101 CYECGETGHFARECRNRG 118
Score = 29.5 bits (63), Expect = 3.4
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 579 CYVCGKPGHISREC 620
CY CG+ GH +REC
Sbjct: 101 CYECGETGHFAREC 114
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 37.1 bits (82), Expect = 0.017
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +3
Query: 306 QREKCFKCNRTGHFARDC 359
Q+EKCF C +TGHFA DC
Sbjct: 261 QQEKCFVCGQTGHFASDC 278
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 405 IARECAQSP-DEPSCYNCNKTGHIARNCP 488
I RE P + C+ C +TGH A +CP
Sbjct: 251 ILREVITYPGQQEKCFVCGQTGHFASDCP 279
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 35.5 bits (78), Expect = 0.051
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 222 CYKCNRTGHFAREC-TQGGVVSRDSGFNRQR 311
CY+C +GHFAREC ++GG R +R R
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSR 128
Score = 32.7 bits (71), Expect = 0.36
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +3
Query: 270 GGVVSRDSGFNRQRE--KCFKCNRTGHFARDCK 362
GG D G R KC++C +GHFAR+C+
Sbjct: 80 GGRGGGDGGRGRGGSDLKCYECGESGHFARECR 112
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 495 GRESATQTCYNCNKSGHISRNC 560
GR + CY C +SGH +R C
Sbjct: 90 GRGGSDLKCYECGESGHFAREC 111
Score = 29.5 bits (63), Expect = 3.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 375 RCYRCNGTGHIAREC 419
+CY C +GH AREC
Sbjct: 97 KCYECGESGHFAREC 111
Score = 29.5 bits (63), Expect = 3.4
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 579 CYVCGKPGHISREC 620
CY CG+ GH +REC
Sbjct: 98 CYECGESGHFAREC 111
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +3
Query: 444 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 563
CY C ++GH AR C G + + ++S R P
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSRSPPRYRKSP 137
>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 831
Score = 35.1 bits (77), Expect = 0.067
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +3
Query: 318 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 488
CF C + GH RDC E D R + +I+ + C C + H A CP
Sbjct: 604 CFYCGKKGHCLRDCLEVTDTELR-DLVQNISVRNGREEASSLCIRCFQLSHWAATCP 659
Score = 33.5 bits (73), Expect = 0.21
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 16/73 (21%)
Frame = +3
Query: 396 TGHIARECAQSPDEPSCYNCNKTGHIARNCPE----------------GGRESATQTCYN 527
+G +A + + C+ C K GH R+C E GRE A+ C
Sbjct: 588 SGSLAENAEEEQRDLICFYCGKKGHCLRDCLEVTDTELRDLVQNISVRNGREEASSLCIR 647
Query: 528 CNKSGHISRNCPD 566
C + H + CP+
Sbjct: 648 CFQLSHWAATCPN 660
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 35.1 bits (77), Expect = 0.067
Identities = 33/148 (22%), Positives = 51/148 (34%), Gaps = 11/148 (7%)
Frame = +3
Query: 210 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNR-QREKCFKCNRTGHFARDCKEEADRCYR 386
+S Y N T E GG + G + +R C++C GH + C +
Sbjct: 444 NSGDSYYMNETYASTNETYNGGYSASAVGTGKVKRRNCYECGEKGHLSTACPIKLQNTSH 503
Query: 387 CNGT-GHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQT------CYNCNKSGH 545
N T H E P + + Y+ K N + + T N
Sbjct: 504 TNSTLDHQTVEA--GPTQVTSYSLQKKTRDTENNGGSFMDESYATVPISIDVTNGANDAS 561
Query: 546 ISRNCPDG---TKTCYVCGKPGHISREC 620
++ G + CY CG+ GH+S C
Sbjct: 562 LTSAVSTGKIKKRNCYECGEKGHLSSAC 589
Score = 33.5 bits (73), Expect = 0.21
Identities = 22/105 (20%), Positives = 36/105 (34%)
Frame = +3
Query: 306 QREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 485
+R C++C GH + C + + + +E Y K +
Sbjct: 393 KRRVCYECGEKGHLSTACPIKLQKADD-QANSKLGQETVDGRPAMQSYGLPKNSGDSYYM 451
Query: 486 PEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 620
E ++T YN S + CY CG+ GH+S C
Sbjct: 452 NE--TYASTNETYNGGYSASAVGTGKVKRRNCYECGEKGHLSTAC 494
Score = 30.7 bits (66), Expect = 1.5
Identities = 33/160 (20%), Positives = 55/160 (34%), Gaps = 8/160 (5%)
Frame = +3
Query: 111 NYNLFVNS*DN*SLNDRYISVLSAQE--FSKPIAMSSSV----CYKCNRTGHFARECT-- 266
+Y L NS D+ +N+ Y S +S + V CY+C GH + C
Sbjct: 438 SYGLPKNSGDSYYMNETYASTNETYNGGYSASAVGTGKVKRRNCYECGEKGHLSTACPIK 497
Query: 267 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSC 446
+S + Q + T + + + + NG + A P
Sbjct: 498 LQNTSHTNSTLDHQTVEAGPTQVTSYSLQKKTRDTEN----NGGSFMDESYATVPISIDV 553
Query: 447 YNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPD 566
N + G + + CY C + GH+S CP+
Sbjct: 554 TNGANDASLTSAVSTG--KIKKRNCYECGEKGHLSSACPN 591
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 34.7 bits (76), Expect = 0.089
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +3
Query: 312 EKCFKCNRTGHFARDC 359
++CFKC R GH+ARDC
Sbjct: 126 DECFKCGRVGHWARDC 141
Score = 32.7 bits (71), Expect = 0.36
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 222 CYKCNRTGHFARECTQGG 275
C+KC R GH+AR+C G
Sbjct: 128 CFKCGRVGHWARDCPSAG 145
Score = 32.3 bits (70), Expect = 0.48
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 435 EPSCYNCNKTGHIARNCPEGG 497
E C+ C + GH AR+CP G
Sbjct: 125 EDECFKCGRVGHWARDCPSAG 145
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = +3
Query: 492 GGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRECDEA 629
GGR+S + G G C+ CG+ GH +R+C A
Sbjct: 99 GGRDSGYSIAGKGSFGGGGGGGGRVGEDECFKCGRVGHWARDCPSA 144
>At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein
contains Pfam profile: PF00098 zinc knuckle
Length = 262
Score = 33.5 bits (73), Expect = 0.21
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Frame = +3
Query: 444 CYNCNKTGHIARNC-------PEGGRESATQTCYNCNKSGHISRNCPDG 569
C+NC H+ARNC P+ S + + N G NC DG
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDG 136
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 10/55 (18%)
Frame = +3
Query: 378 CYRCNGTGHIAREC----AQSPD------EPSCYNCNKTGHIARNCPEGGRESAT 512
C+ C H+AR C PD P + N G NC +GG S T
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDGGTSSGT 142
>At4g19130.1 68417.m02823 replication protein-related similar to
replication protein A 70kDa [Oryza sativa] GI:13536993;
contains Pfam profile PF00098: Zinc knuckle
Length = 461
Score = 33.1 bits (72), Expect = 0.27
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 450 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 575
+ +++G + GG AT +C C SGH+S CP TK
Sbjct: 392 HAHQSGQSGNHYSGGG---ATTSCNVCGNSGHVSAKCPGATK 430
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 525 NCNKSGHISRNCPDG--TKTCYVCGKPGHISRECDEA 629
+ ++SG + G T +C VCG GH+S +C A
Sbjct: 392 HAHQSGQSGNHYSGGGATTSCNVCGNSGHVSAKCPGA 428
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 33.1 bits (72), Expect = 0.27
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 318 CFKCNRTGHFARDCKEEA 371
CFKC R GH++RDC A
Sbjct: 8 CFKCGRPGHWSRDCPSSA 25
Score = 31.5 bits (68), Expect = 0.83
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 501 ESATQTCYNCNKSGHISRNCP 563
ESA C+ C + GH SR+CP
Sbjct: 2 ESAPTGCFKCGRPGHWSRDCP 22
Score = 30.3 bits (65), Expect = 1.9
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +3
Query: 579 CYVCGKPGHISREC 620
C+ CG+PGH SR+C
Sbjct: 8 CFKCGRPGHWSRDC 21
Score = 29.9 bits (64), Expect = 2.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 222 CYKCNRTGHFARECTQGGVVS 284
C+KC R GH++R+C V+
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVA 28
>At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)
identical to SP|Q9SI64 Arginine decarboxylase 1 (EC
4.1.1.19) (ARGDC 1) (ADC 1) (ADC-O) {Arabidopsis
thaliana}
Length = 702
Score = 33.1 bits (72), Expect = 0.27
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +2
Query: 431 GRAVVLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 574
G +VV LQ DGPH ++R G AD+L Q P L + +H+
Sbjct: 578 GPSVVRVLQSDGPHGFAVTRAVMGQSSADVLRAMQHEPELMFQTLKHR 625
>At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar to
Chaperone protein dnaJ (SP:Q9WZV3) [Thermotoga maritima]
Length = 97
Score = 32.7 bits (71), Expect = 0.36
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +3
Query: 375 RCYRCNGTGHIARECAQ-SPDEPSCYNCNKTGHIA-RNCPEGG 497
RC CNGTG + C++ S + C C+ +G A NC G
Sbjct: 37 RCPTCNGTGRVTCFCSRWSDGDVGCRRCSGSGRAACSNCGGSG 79
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 32.3 bits (70), Expect = 0.48
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 498 RESATQTCYNCNKSGHISRNCPD 566
RES +C+ C KSGH + +CPD
Sbjct: 721 RESFGGSCFICGKSGHRATDCPD 743
Score = 29.1 bits (62), Expect = 4.4
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +3
Query: 576 TCYVCGKPGHISRECDEAR 632
+C++CGK GH + +C + R
Sbjct: 727 SCFICGKSGHRATDCPDKR 745
Score = 28.7 bits (61), Expect = 5.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 441 SCYNCNKTGHIARNCPE 491
SC+ C K+GH A +CP+
Sbjct: 727 SCFICGKSGHRATDCPD 743
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 31.9 bits (69), Expect = 0.63
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 306 QREKCFKCNRTGHFARDCK 362
Q+E+CF C + GHFA +C+
Sbjct: 260 QQERCFLCGQMGHFASNCE 278
>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 1080
Score = 31.5 bits (68), Expect = 0.83
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 486 PEGGRESATQTCYNCNKSGHISRNC 560
P + A + CY C K GH++R+C
Sbjct: 915 PSEETDDAVKICYRCKKVGHLARDC 939
Score = 31.5 bits (68), Expect = 0.83
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 549 SRNCPDGTKTCYVCGKPGHISREC 620
S D K CY C K GH++R+C
Sbjct: 916 SEETDDAVKICYRCKKVGHLARDC 939
Score = 30.7 bits (66), Expect = 1.5
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 219 VCYKCNRTGHFAREC 263
+CY+C + GH AR+C
Sbjct: 925 ICYRCKKVGHLARDC 939
Score = 30.7 bits (66), Expect = 1.5
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Frame = +3
Query: 318 CFKCNRTGHFARDC--KEEAD 374
C++C + GH ARDC KE +D
Sbjct: 926 CYRCKKVGHLARDCHGKETSD 946
Score = 30.3 bits (65), Expect = 1.9
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 444 CYNCNKTGHIARNC 485
CY C K GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
Score = 29.9 bits (64), Expect = 2.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 378 CYRCNGTGHIAREC 419
CYRC GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
>At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 532
Score = 31.5 bits (68), Expect = 0.83
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 432 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 539
D P C+NC H R CP SA + KS
Sbjct: 239 DPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKS 274
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +3
Query: 363 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 497
++ RC+ C G H REC + D + + K RN G
Sbjct: 238 DDPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKSKRNQNSSG 282
>At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 474
Score = 31.5 bits (68), Expect = 0.83
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 435 EPSCYNCNKTGHIARNCPEGGRESATQ 515
E +CY C + GHIA+ CP RE+ T+
Sbjct: 224 ELTCYRCKQEGHIAKICPT--RETTTK 248
Score = 30.7 bits (66), Expect = 1.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 516 TCYNCNKSGHISRNCPDGTKTCYV 587
TCY C + GHI++ CP T V
Sbjct: 226 TCYRCKQEGHIAKICPTRETTTKV 249
>At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 431 GRAVVLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 574
G +VV Q DGPH ++R G AD+L Q P L + +H+
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHR 637
>At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 431 GRAVVLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 574
G +VV Q DGPH ++R G AD+L Q P L + +H+
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHR 637
>At3g31950.1 68416.m04046 hypothetical protein
Length = 507
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Frame = +3
Query: 384 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC----PEGGRESATQTCYNCNKSGHIS 551
R + R+ A +P + C C T H+ +C P CY C GH+S
Sbjct: 268 RATARKSVGRKLA-TPAKRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVS 326
Query: 552 RNCP 563
CP
Sbjct: 327 MYCP 330
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 9/46 (19%)
Frame = +3
Query: 309 REKCFKCNRTGHFARDC---------KEEADRCYRCNGTGHIAREC 419
+ C C T H DC + +CY C G GH++ C
Sbjct: 284 KRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVSMYC 329
>At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak
similarity to Chaperone protein dnaJ (Swiss-Prot:Q9ZFC5)
[Methylovorus sp.]
Length = 419
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 7/89 (7%)
Frame = +3
Query: 363 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG---GRESATQTCYNCN 533
E ++C C G G + + EP Y N+ + G ++ + C NCN
Sbjct: 196 ETVEKCTGCTGRGDVVCPTCNADGEPGFYKENQMMKCSTCYGRGLVAHKDGSDTICTNCN 255
Query: 534 KSGHISRNCPD----GTKTCYVCGKPGHI 608
G + CP G C C G +
Sbjct: 256 GKGKLP--CPTCQSRGLIKCQTCDSTGSL 282
>At5g08730.1 68418.m01037 IBR domain-containing protein contains
similarity to Swiss-Prot:Q94981 ariadne-1 protein
(Ari-1) [Drosophila melanogaster]
Length = 500
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +3
Query: 483 CPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRECDEA 629
CP G E A + + N+ IS C G C+ CG H C +A
Sbjct: 169 CPASGCEYAVELQEDGNEDNVISVVCLCGHTFCWTCGLESHRPVSCKKA 217
>At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase
family protein low similarity to phosphatidylinositol
3,5-kinase [Candida albicans] GI:14571648; contains Pfam
profile PF01504: Phosphatidylinositol-4-phosphate
5-Kinase
Length = 1648
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +3
Query: 351 RDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 527
RDC+ A RCY G AR C + PS N + I E G SA ++
Sbjct: 126 RDCRNMASIRCYPSRGEEEEARYCGKQLLSPSSDNYQDSSDI-----ESGSVSARHELFS 180
Query: 528 CNKS 539
C S
Sbjct: 181 CKSS 184
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Frame = +3
Query: 519 CYNCNKSGHISRNCPDGTKT------CYVCGKPGHISREC 620
C C + GH CP T T C +CG GH + +C
Sbjct: 363 CRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDC 402
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +3
Query: 432 DEPSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCP 563
DE C C + GH CP + C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Frame = +3
Query: 519 CYNCNKSGHISRNCPDGTKT------CYVCGKPGHISREC 620
C C + GH CP T T C +CG GH + +C
Sbjct: 363 CRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDC 402
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +3
Query: 432 DEPSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCP 563
DE C C + GH CP + C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +3
Query: 384 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 497
R NG G E P C+ CN GH ++CP G
Sbjct: 191 RMNGRG-FGMERKTPPPGYVCHRCNIPGHFIQHCPTNG 227
Score = 28.7 bits (61), Expect = 5.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 219 VCYKCNRTGHFARECTQGG 275
VC++CN GHF + C G
Sbjct: 209 VCHRCNIPGHFIQHCPTNG 227
>At5g47390.1 68418.m05840 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 365
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 510 TQTCYNCNKSGHISRNCPD 566
T+ C +CN +GH SR CP+
Sbjct: 2 TRRCSHCNHNGHNSRTCPN 20
>At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 341
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 192 SKPIAMSSSVCYKCNRTGHFAREC 263
+KP + SVCY+C H+A+ C
Sbjct: 268 NKPRGKAKSVCYRCGMDDHWAKTC 291
>At4g39960.1 68417.m05660 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 447
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +3
Query: 372 DRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHIARNCPEG-GRESATQTCYNCNKSGH 545
+ C CNG+G A++ +P+ C C G + + G TC CN +G
Sbjct: 228 ESCGTCNGSG------AKAGTKPTKCKTCGGQGQVVASTRTPLGVFQQVMTCSPCNGTGE 281
Query: 546 ISRNC 560
IS+ C
Sbjct: 282 ISKPC 286
>At4g17410.1 68417.m02607 expressed protein
Length = 744
Score = 30.3 bits (65), Expect = 1.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 219 VCYKCNRTGHFARECTQGG 275
VC++CN +GHF + C+ G
Sbjct: 120 VCHRCNVSGHFIQHCSTNG 138
>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 200
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 405 IARECAQSPDEP-SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 557
++R+ ++S E +C+ C + GH +CP E + Y ++ RN
Sbjct: 147 VSRDRSKSKGEKGACWICGEDGHYKNDCPSRNSEKPKEHAYKAQEASVPRRN 198
>At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 373
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/72 (30%), Positives = 27/72 (37%), Gaps = 11/72 (15%)
Frame = +3
Query: 411 RECAQSPDEPSCYNCNKTGHIARNCPE---GGRESAT---QTCYNCNKSGHISRN----- 557
R C + C NC H +C E GRE T + C +C +S
Sbjct: 267 RRCCYKCRKHFCINCKVPWHSNLSCKEHKSSGREPITTVWRQCRSCLHKIKLSEERMPVT 326
Query: 558 CPDGTKTCYVCG 593
C G K CY CG
Sbjct: 327 CRCGYKFCYACG 338
>At3g16350.1 68416.m02068 myb family transcription factor ; contains
Pfam profile: PF00249 Myb-like DNA-binding domain
Length = 387
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3
Query: 510 TQTCYNCNKSGHISRNCPD-GTKTCYVCGKPG 602
T+ C +C+ +GH SR CP G TC G G
Sbjct: 2 TRRCSHCSNNGHNSRTCPTRGGGTCGGSGGGG 33
>At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 403
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +3
Query: 363 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 500
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +3
Query: 432 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 575
D P C+NC H R CP SA N + RN G++
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVS---NARRQHKRKRNQTPGSR 238
>At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 405
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +3
Query: 363 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 500
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +3
Query: 432 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 575
D P C+NC H R CP SA N + RN G++
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVS---NARRQHKRKRNQTPGSR 238
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 29.9 bits (64), Expect = 2.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 360 KEEADRCYRCNGTGHIARECAQSP 431
K + + C++C T HIA++C P
Sbjct: 336 KGKGNGCFKCGSTDHIAKDCVGGP 359
Score = 28.7 bits (61), Expect = 5.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 318 CFKCNRTGHFARDC 359
CFKC T H A+DC
Sbjct: 342 CFKCGSTDHIAKDC 355
>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
[Drosophila melanogaster]
Length = 926
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +3
Query: 465 GHIARNCPEGGRESATQTCYNCNKSGHISRNCP 563
G N +G + C +C + GH S NCP
Sbjct: 749 GTAPSNNIQGSNTRQSNVCIHCQQRGHASTNCP 781
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Frame = +3
Query: 525 NCNKSGHISRNCPDGTKTCYVCGKPGHISRECDE----ARN*PQPP 650
N S I + CY CG GH+S EC + R P PP
Sbjct: 136 NGRASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGPRERPPPP 181
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 180 AQEF-SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRD 290
A EF K + S CY+C GH + EC + + R+
Sbjct: 139 ASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGPRE 176
Score = 28.3 bits (60), Expect = 7.7
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +3
Query: 363 EEADRCYRCNGTGHIARECAQS 428
++ RCY C GH++ EC ++
Sbjct: 149 KDKSRCYECGDEGHLSYECPKN 170
Score = 28.3 bits (60), Expect = 7.7
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 432 DEPSCYNCNKTGHIARNCPE 491
D+ CY C GH++ CP+
Sbjct: 150 DKSRCYECGDEGHLSYECPK 169
>At2g16690.1 68415.m01915 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 240
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 270 GGVVSRDSGFNRQREKCFKCNRTGHFARDC 359
G VVS + R R++CF C R H DC
Sbjct: 188 GEVVSVTFDYERIRKRCFFCQRLTHDKADC 217
>At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains
Pfam PF00684 : DnaJ central domain (4 repeats); similar
to bundle sheath defective protein 2 (GI:4732091) [Zea
mays]
Length = 154
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +3
Query: 360 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 539
+E C+ CNGTG AQ C C +G++ GG E C NC+ +
Sbjct: 81 RENTQPCFPCNGTG------AQ-----KCRLCVGSGNVTVEL--GGGEKEVSNCINCDGA 127
Query: 540 GHIS 551
G ++
Sbjct: 128 GSLT 131
>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
protein similar to Sin3 protein [Yarrowia lipolytica]
GI:18076824; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 1173
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Frame = +3
Query: 237 RTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARD---------CKEEADRCYRC 389
R+ + C + G ++ + ++E C K + A + C EE +R C
Sbjct: 778 RSNKDKQSCDKKGAKNKTRAEDDKQENCHKLSENNKTASEMLVSGTKVSCHEENNRVMNC 837
Query: 390 NGTGHIARECA 422
NG G +A E A
Sbjct: 838 NGRGSVAGEMA 848
>At5g61670.2 68418.m07738 expressed protein
Length = 307
Score = 29.1 bits (62), Expect = 4.4
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Frame = +3
Query: 360 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP----EGGRES----ATQ 515
++E RC C GTG++A C C+ TG + P GG S T+
Sbjct: 224 QQEHKRCKYCLGTGYLA-----------CARCSSTGALVLTEPVSAIAGGNHSLSPPKTE 272
Query: 516 TCYNCNKSGHISRNCP 563
C NC+ +G + CP
Sbjct: 273 RCSNCSGAGKVM--CP 286
>At5g61670.1 68418.m07737 expressed protein
Length = 307
Score = 29.1 bits (62), Expect = 4.4
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Frame = +3
Query: 360 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP----EGGRES----ATQ 515
++E RC C GTG++A C C+ TG + P GG S T+
Sbjct: 224 QQEHKRCKYCLGTGYLA-----------CARCSSTGALVLTEPVSAIAGGNHSLSPPKTE 272
Query: 516 TCYNCNKSGHISRNCP 563
C NC+ +G + CP
Sbjct: 273 RCSNCSGAGKVM--CP 286
>At2g41570.1 68415.m05137 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 418
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 270 GGVVSRDSGFNRQREKCFKCNRTGHFARDC 359
G +VS + R R++CF C R H DC
Sbjct: 188 GEIVSVTFDYERIRKRCFLCQRLTHEKGDC 217
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 29.1 bits (62), Expect = 4.4
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 519 CYNCNKSGHISRNCPDGTKT 578
C++C++ GH ++NCP T T
Sbjct: 6 CFHCHQPGHWAKNCPLKTTT 25
Score = 29.1 bits (62), Expect = 4.4
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +3
Query: 444 CYNCNKTGHIARNCP 488
C++C++ GH A+NCP
Sbjct: 6 CFHCHQPGHWAKNCP 20
Score = 28.7 bits (61), Expect = 5.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 207 MSSSVCYKCNRTGHFAREC 263
MSS C+ C++ GH+A+ C
Sbjct: 1 MSSGDCFHCHQPGHWAKNC 19
>At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical to
XRN2 [Arabidopsis thaliana] GI:11875630; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 1012
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 297 FNRQREKCFKCNRTGHFARDCKEEADR 377
F + KCF C + GH A DC+ + R
Sbjct: 259 FPGEEGKCFLCGQEGHRAADCEGKIKR 285
>At5g21140.1 68418.m02524 expressed protein
Length = 312
Score = 28.7 bits (61), Expect = 5.9
Identities = 22/68 (32%), Positives = 29/68 (42%)
Frame = +3
Query: 411 RECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVC 590
R ++ D PSC CN+ G A CP G + C K R+ K C C
Sbjct: 187 RSWFRNNDVPSCEVCNEAGVKADLCPTEG--CPVRIHKYCLKKLLSQRD----DKRCSGC 240
Query: 591 GKPGHISR 614
GKP +S+
Sbjct: 241 GKPWPLSK 248
>At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar to
unknown protein (pir||T00468); contains Pfam PF00684 :
DnaJ central domain (4 repeats)
Length = 315
Score = 28.7 bits (61), Expect = 5.9
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +3
Query: 360 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 539
++E RC C GTG++ CA+ C + + R + + + T+ C NC+ +
Sbjct: 232 QQEKKRCKYCLGTGYL--PCARCSASGVCLSIDPITR-PRATNQLMQVATTKRCLNCSGA 288
Query: 540 GHISRNCP 563
G + CP
Sbjct: 289 GKVM--CP 294
>At5g06130.1 68418.m00681 chaperone protein dnaJ-related similar to
unknown protein (pir||T00468); contains Pfam PF00684 :
DnaJ central domain (4 repeats)
Length = 231
Score = 28.7 bits (61), Expect = 5.9
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +3
Query: 360 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 539
++E RC C GTG++ CA+ C + + R + + + T+ C NC+ +
Sbjct: 148 QQEKKRCKYCLGTGYL--PCARCSASGVCLSIDPITR-PRATNQLMQVATTKRCLNCSGA 204
Query: 540 GHISRNCP 563
G + CP
Sbjct: 205 GKVM--CP 210
>At4g06479.1 68417.m00885 hypothetical protein
Length = 370
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Frame = +3
Query: 378 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNC 485
C C+ T H EC P D CY C GH++ C
Sbjct: 298 CEICSHTDHPTEECLYPPQTIPYTDDYAKCYYCEGMGHMSMYC 340
>At2g38560.1 68415.m04737 transcription factor S-II (TFIIS)
domain-containing protein similar to SP|P49373
Transcription elongation factor S-II (TFIIS)
{Schizosaccharomyces pombe}; contains Pfam profile
PF01096: Transcription factor S-II (TFIIS)
Length = 378
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 555 CGRCGRTCCSYSRSASQTPAPPRDSSVRC 469
CGRCG+ C+Y + +++ P + V C
Sbjct: 340 CGRCGQRKCTYYQMQTRSADEPMTTYVTC 368
>At2g31850.1 68415.m03889 expressed protein
Length = 113
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Frame = -3
Query: 567 RRDSCGRCGRT---CCSYSRSASQTPAPPRDSSVRCGPSCCSCNTTARPGS 424
R+D G G + C S S P S SCC C++TA GS
Sbjct: 61 RQDDAGLSGSSTGSCSSPDSSTGSNSVPAPVPSPAPAGSCCCCSSTADSGS 111
>At2g07740.1 68415.m01002 zinc knuckle (CCHC-type) family protein
similar to zinc finger protein GB:AAA75253; some members
of this protein family have a weak CCHC zinc fingers
that is mostly from retroviral gag proteins
(nucleocapsid)
Length = 409
Score = 28.7 bits (61), Expect = 5.9
Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 3/88 (3%)
Frame = +3
Query: 342 HFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPEGGRESAT 512
HFAR C + + GT + EC + E C C GH+A CP+
Sbjct: 159 HFARVCVK-VNLKQPLKGTVVVNGECYYASYEGLNVICSLCGVFGHLAGACPKRSPGPVV 217
Query: 513 QTCYNCNKSGHISRNCPDGTKTCYVCGK 596
Q + K +S G + CGK
Sbjct: 218 QAGASPRKGNDVSSRGIGGEEIRKECGK 245
>At4g30200.3 68417.m04295 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 702
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 450 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 557
NCN H A E G E + SGHI +N
Sbjct: 594 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 629
>At4g30200.2 68417.m04294 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 714
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 450 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 557
NCN H A E G E + SGHI +N
Sbjct: 606 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 641
>At4g30200.1 68417.m04293 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 685
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 450 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 557
NCN H A E G E + SGHI +N
Sbjct: 577 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 612
>At3g07650.2 68416.m00917 zinc finger (B-box type) family protein
similar to zinc finger protein GB:BAA33206 [Oryza
sativa]
Length = 372
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = +3
Query: 444 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGH 605
C +C+++ H A + R S T C CN R + C C GH
Sbjct: 25 CLSCDRSVHSANALSK--RHSRTLVCERCNAQPATVRCVEERVSLCQNCDWSGH 76
>At3g07650.1 68416.m00916 zinc finger (B-box type) family protein
similar to zinc finger protein GB:BAA33206 [Oryza
sativa]
Length = 372
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = +3
Query: 444 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGH 605
C +C+++ H A + R S T C CN R + C C GH
Sbjct: 25 CLSCDRSVHSANALSK--RHSRTLVCERCNAQPATVRCVEERVSLCQNCDWSGH 76
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,875,573
Number of Sequences: 28952
Number of extensions: 340027
Number of successful extensions: 1699
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1439
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2236853040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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