Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_F04
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   154   1e-38
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   154   1e-38
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    29   0.89 
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    29   1.2  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    27   2.7  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    27   3.6  
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           27   3.6  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  154 bits (374), Expect = 1e-38
 Identities = 66/102 (64%), Positives = 82/102 (80%)
 Frame = +3

Query: 105 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 284
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 285 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTG 410
           TCQ+  SR+ GD+++  A+S ELPRYG+K GL N+ AAY+TG
Sbjct: 61  TCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATG 102



 Score = 72.9 bits (171), Expect = 6e-14
 Identities = 32/56 (57%), Positives = 42/56 (75%)
 Frame = +1

Query: 481 QGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLXVPHSIXRXP 648
           +G+    E +++GP  F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS  R P
Sbjct: 126 EGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFP 181


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  154 bits (374), Expect = 1e-38
 Identities = 66/102 (64%), Positives = 82/102 (80%)
 Frame = +3

Query: 105 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 284
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 285 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTG 410
           TCQ+  SR+ GD+++  A+S ELPRYG+K GL N+ AAY+TG
Sbjct: 61  TCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATG 102



 Score = 72.9 bits (171), Expect = 6e-14
 Identities = 32/56 (57%), Positives = 42/56 (75%)
 Frame = +1

Query: 481 QGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLXVPHSIXRXP 648
           +G+    E +++GP  F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS  R P
Sbjct: 126 EGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFP 181


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 40  DLPFFLLGVPSVDATL*LRFKIWDSLKL*RTNNTSRGTK*NSRGV 174
           DLPF+ +G  S      LR +IW SL+      T  G    SR +
Sbjct: 801 DLPFYCVGFKSATPEYTLRTRIWASLRTQTLYRTINGFSNYSRAI 845


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 40   DLPFFLLGVPSVDATL*LRFKIWDSLKL*RTNNTSRGTK*NSRGV 174
            DLPF+ +G  S      LR +IW SL+      T+ G    SR +
Sbjct: 897  DLPFYCIGFKSTAPEYTLRTRIWASLRSQTLYRTASGMMNYSRAL 941


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 40   DLPFFLLGVPSVDATL*LRFKIWDSLKL*RTNNTSRGTK*NSRGV 174
            DLPF+ +G  S      LR +IW SL+      T  G    SR +
Sbjct: 983  DLPFYCIGFKSAMPEYTLRTRIWASLRSQTLYRTISGFMNYSRAI 1027


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 40   DLPFFLLGVPSVDATL*LRFKIWDSLKL*RTNNTSRGTK*NSRGV 174
            DLPF+ +G  +      LR +IW SL+      T  G    SR +
Sbjct: 959  DLPFYCIGFKNATPEYTLRTRIWASLRSQTLYRTVSGFMNYSRAI 1003


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 435 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 343
           EAV + + D  + L  +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,952,624
Number of Sequences: 5004
Number of extensions: 59048
Number of successful extensions: 170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)