Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_F04
         (893 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)             101   8e-22
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)          96   3e-20
SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)                   29   3.8  
SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083)                    29   3.8  
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.7  
SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23)                   28   8.9  
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
          Length = 328

 Score =  101 bits (242), Expect = 8e-22
 Identities = 44/55 (80%), Positives = 49/55 (89%)
 Frame = +1

Query: 484 GDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLXVPHSIXRXP 648
           GDEYNVE VD  PGAFRC+LDVGLART+TGARVFGA+KGAVDGGL +PHS+ R P
Sbjct: 159 GDEYNVESVDGSPGAFRCFLDVGLARTSTGARVFGALKGAVDGGLEIPHSMKRFP 213



 Score = 80.6 bits (190), Expect = 2e-15
 Identities = 32/42 (76%), Positives = 38/42 (90%)
 Frame = +3

Query: 168 RRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQ 293
           RR +GKTDYYARKRL+ QDKNKYNTPKYR +VR++NKD+ CQ
Sbjct: 17  RRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQ 58


>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
          Length = 113

 Score = 96.3 bits (229), Expect = 3e-20
 Identities = 42/58 (72%), Positives = 51/58 (87%)
 Frame = +1

Query: 457 YTLAQQMSQGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLXVPH 630
           YT  ++++ GDEYNVE +D  PGAFRC+LDVGLART+TGARVFGA+KGAVDGGL +PH
Sbjct: 56  YTGTEEVN-GDEYNVESIDGSPGAFRCFLDVGLARTSTGARVFGALKGAVDGGLEIPH 112



 Score = 75.4 bits (177), Expect = 6e-14
 Identities = 31/39 (79%), Positives = 37/39 (94%)
 Frame = +3

Query: 294 VAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTG 410
           +AY+++EGD I+CAAY+HELPRYGVKVGLTNYAAAY TG
Sbjct: 1   IAYAKLEGDVIICAAYAHELPRYGVKVGLTNYAAAYCTG 39


>SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)
          Length = 791

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = -1

Query: 617 RPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLS--TGST 498
           RP    PF+ P +RAP    A PT+      P P S  TG T
Sbjct: 357 RPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSSQTGKT 398


>SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083)
          Length = 624

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = -1

Query: 617 RPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLS--TGST 498
           RP    PF+ P +RAP    A PT+      P P S  TG T
Sbjct: 223 RPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSSQTGKT 264


>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 255 LIVRLSNKDVTCQVAYSRIEGD-HIVC 332
           L++ LS +D+TC V YS   G+ H +C
Sbjct: 108 LLLYLSKRDITCPVPYSSRNGELHTMC 134


>SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23)
          Length = 232

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 191 ISFPFTTPLEFYLVPLEVLFVLHNFNESHILNLSYK 84
           ISFPFTT  E Y    +V F+    N    LNL+ +
Sbjct: 119 ISFPFTTRKEAYRQLSKVPFIAGTTNTQEALNLAQR 154


>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3160

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 303 SRIEGDHIVCAAYSH-ELPRYGVKVGLTNYAAAY 401
           ++  GDH+  A+YSH ++ R+ V + L    AAY
Sbjct: 133 AKYRGDHLDIASYSHQQIDRFAVLLDLWTNEAAY 166


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,911,596
Number of Sequences: 59808
Number of extensions: 472549
Number of successful extensions: 1443
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1434
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2562198215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)