Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_F04
         (893 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical pr...   187   8e-48
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    30   2.6  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    30   2.6  
Z35663-2|CAA84735.2|  335|Caenorhabditis elegans Hypothetical pr...    29   5.9  
Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U40414-5|AAA81408.2|  339|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    28   7.8  

>Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical
           protein F54C9.5 protein.
          Length = 293

 Score =  187 bits (456), Expect = 8e-48
 Identities = 84/102 (82%), Positives = 94/102 (92%)
 Frame = +3

Query: 105 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 284
           MG VKV+KNK YFKRYQVK +RRREGKTDYYARKRL VQDKNKYNTPKYRLIVR++NKDV
Sbjct: 1   MGLVKVIKNKAYFKRYQVKLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRITNKDV 60

Query: 285 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTG 410
             Q+AYS+IEGD +V +AYSHELPRYG+KVGLTNYAAAY+TG
Sbjct: 61  VAQLAYSKIEGDVVVASAYSHELPRYGLKVGLTNYAAAYATG 102



 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 30/54 (55%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
 Frame = +1

Query: 484 GDEYNVEPV-DNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLXVPHSIXR 642
           G++YNVE   D  P  F+  LD+GLARTTTG+++F  MKG  DGG+ VPHS  R
Sbjct: 127 GEDYNVEEEGDRAP--FKAVLDIGLARTTTGSKIFAVMKGVADGGINVPHSESR 178


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
            F25H8.3 protein.
          Length = 2165

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 339  KQRTQYGHLQSESRPPGMLHLCWRDAQSDDI*VCYI-CS 226
            +QR     ++ + + P   HLC R+++  DI  CYI CS
Sbjct: 980  RQRVSCVKMEGDRQTPASEHLCDRNSKPSDIASCYIDCS 1018


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
            protein F25H8.3 protein.
          Length = 2165

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 339  KQRTQYGHLQSESRPPGMLHLCWRDAQSDDI*VCYI-CS 226
            +QR     ++ + + P   HLC R+++  DI  CYI CS
Sbjct: 980  RQRVSCVKMEGDRQTPASEHLCDRNSKPSDIASCYIDCS 1018


>Z35663-2|CAA84735.2|  335|Caenorhabditis elegans Hypothetical
           protein T04A8.2 protein.
          Length = 335

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = -3

Query: 549 YIQITSKCSWSIVDRFNIVFITL*HLLCQCIRCQVQVFEAVFVLIADQLNMLQHNLS 379
           Y++   K +W+   RF ++FIT+   L   I C   +F  + V++  +L  ++  LS
Sbjct: 187 YMEYIKKVAWASQSRFQLIFITI--ALLFTIVCTSVIFYTL-VMLPKRLRNVERTLS 240


>Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical
           protein K10G4.5 protein.
          Length = 1251

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +3

Query: 234 YNTPKYRLIVRLSNKDVTCQVAYSRIEGDHI---VCAAYSHEL 353
           YN P+YR +++L  K   C+     + GD++   +CA +  EL
Sbjct: 548 YNDPEYRNVMKLKIKSPICE--QCEVTGDNLPFGICAEHETEL 588


>U40414-5|AAA81408.2|  339|Caenorhabditis elegans Hypothetical
           protein F53B3.5 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -1

Query: 509 TGSTLYSSPCDICCASV 459
           +GS ++SSPC + CASV
Sbjct: 13  SGSPMFSSPCHLSCASV 29


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +2

Query: 653 PXPILXXPXKSPXXIPXGXPPLGXPXCP 736
           P PI   P   P   P   PP+  P CP
Sbjct: 67  PPPICPPPPPPPMPCPPPPPPMPRPSCP 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,871,962
Number of Sequences: 27780
Number of extensions: 351922
Number of successful extensions: 959
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)