Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_F03
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    29   0.90 
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    28   2.1  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      28   2.1  
SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid protease|Schi...    27   2.8  
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|...    26   8.4  

>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +1

Query: 478 YFGQIFMAITPEEHWCSVPELANLSVIERRHLSIPMLNNKYS--KCEVYD 621
           YF   F  ++ E +   +P   NLS +   H+SI +L + YS  K E++D
Sbjct: 782 YFSSYFQFVSMESNSFDIPITVNLSHLTVEHMSI-VLRHVYSDLKVELFD 830


>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 794 VFFCGAILGGFIFGWIXDKYGR 859
           + + G I+G   FGW  D++GR
Sbjct: 123 IAYVGTIVGQLSFGWYSDRFGR 144


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +1

Query: 436 FLLMIPYAFFFAFVYFGQIFMAITPEEHWCSVPELANLSVIERRHLSIP 582
           F L   ++F F  ++F   F  +   +H   +P+   LS +  RH  +P
Sbjct: 114 FSLFSFFSFLFTSLHFN-FFFRLCRHKHLLDIPDQTTLSSLLHRHTRLP 161


>SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid
           protease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 298

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +2

Query: 809 AILGGFIFGWIXDKYG 856
           A LGG IFGW+  KYG
Sbjct: 257 AHLGGGIFGWLYAKYG 272


>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 113 DDEKLSLFNAPTCVEQELPKACQS 42
           DDE+      P C E++ PK C+S
Sbjct: 75  DDEESCEKKKPKCCEKKKPKCCES 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,555,547
Number of Sequences: 5004
Number of extensions: 71509
Number of successful extensions: 194
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)