Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_F03
         (904 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    26   0.41 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          26   0.54 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   2.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.9  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   6.7  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 26.2 bits (55), Expect = 0.41
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 709 NYTDVPYETIATQXAGCVTRTLCRHSSXGVFLWGHTGW 822
           NYTDV +  +       +  T+C +S+ G F+     W
Sbjct: 391 NYTDVXFRILTMPVRDAIAGTICENSAWG-FVGNSLWW 427


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 25.8 bits (54), Expect = 0.54
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 361 NRHRLKDLDDLLPYMGEFGW 420
           NR+ L+ L + LPY+ EF W
Sbjct: 268 NRYYLERLSNDLPYLEEFDW 287


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 361 NRHRLKDLDDLLPYMGEFGW 420
           NR+ L+ L + LP++ EF W
Sbjct: 268 NRYYLERLSNDLPHLEEFDW 287


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +3

Query: 216 KSKRKKCLIRQELFSEMGSRERSFQGHGANAP*PYQ 323
           + K  +CL+ Q+ F +    +   + HG     PY+
Sbjct: 58  EEKTYQCLLCQKAFDQKNLYQSHLRSHGKEGEDPYR 93


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -2

Query: 531 HRAPVLLRSYGHEYLPEV---DECEEERVRYHQQEQHALVPT 415
           HR P L+R    +YLP +      ++ R+R+  +  +  +PT
Sbjct: 328 HRMPQLIRKIFLKYLPTILMMRRPKKTRLRWMMEIPNVTLPT 369


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,789
Number of Sequences: 438
Number of extensions: 4654
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)