Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_F02
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.50 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.7  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   3.5  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   8.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 15/39 (38%), Positives = 15/39 (38%)
 Frame = +2

Query: 437 PTPXFXXPPPPXXGXPXXPPXGXGXXMGXXPSXPKXGPP 553
           P P    PP P  G P  PP   G   G  P  P   PP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPG-VAGAGPPPPPPPPP 783



 Score = 29.1 bits (62), Expect = 0.87
 Identities = 15/48 (31%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
 Frame = +1

Query: 445 PFXXXPP-PXXGXPPXPPXXXXXXNGGXPLXPQXGXXXXXGGXXXFPP 585
           P    PP P  G PP PP        G P  P        GG   + P
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/42 (38%), Positives = 16/42 (38%)
 Frame = -2

Query: 537 GXEGXXPIXXPXPXGGXXGXPXXGGGGLXKXGVGXPXXRGGP 412
           G  G  P       GG  G P   GGGL   G G     GGP
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGP 265


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/53 (28%), Positives = 16/53 (30%), Gaps = 1/53 (1%)
 Frame = +2

Query: 416 PPLXXGXPTPXFXXPPPPXXGXPXX-PPXGXGXXMGXXPSXPKXGPPXXGGXP 571
           PP+    P      PPP     P   PP          P  PK  PP     P
Sbjct: 158 PPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAP 210


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/38 (28%), Positives = 12/38 (31%)
 Frame = +2

Query: 458  PPPPXXGXPXXPPXGXGXXMGXXPSXPKXGPPXXGGXP 571
            PPPP    P   P          P+ P  G     G P
Sbjct: 1883 PPPPPMALPKAGPPSAAPTSALPPAGPPAGATAISGNP 1920


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,995,724
Number of Sequences: 5004
Number of extensions: 26524
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)