Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_F01
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.92 
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    27   4.9  
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p...    27   4.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    22   9.1  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 24/104 (23%), Positives = 27/104 (25%), Gaps = 4/104 (3%)
 Frame = +3

Query: 585 PPKIXAXYXXFPXNTTRXSTXSXXPPTPPXXPSXXXPSXP--XXXXXXSXXPXXXXXXXX 758
           PP+        P   +     S  P  PP  P    P+ P        S  P        
Sbjct: 365 PPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLP 424

Query: 759 XXXXPXPPXXXPXXXPXXXXXXP--XPXXPXPPPXPPXXXXXPP 884
               P  P   P   P      P   P  P  PP P      PP
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP 468



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 20/78 (25%), Positives = 21/78 (26%), Gaps = 3/78 (3%)
 Frame = +2

Query: 659 PHSPPXTLXXXXXXXPXXXXXLLXPXPXXXXPPXXXPXXP---PXXXPXXXSXPXXXPXP 829
           P  PP          P      L P      PP   P  P   P   P   S P   P P
Sbjct: 401 PALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460

Query: 830 XXXPXSPXXXXXXXXXPP 883
              P +P         PP
Sbjct: 461 AGMPAAPPLPPAAPAPPP 478


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
 Frame = +1

Query: 172 RRDAPDFFKDIEHHTKEFHKTLXQQFNSL-----TKSKDAQD--FXQGLEGRLRVRAATA 330
           ++   DFFK +    ++ H TL ++ NSL     TKS  A +  F  GL   L ++    
Sbjct: 56  KKSEQDFFKMLSSRDRDAHSTLRKRSNSLSSFLSTKSTSASENKFHGGLNW-LSLKLNLL 114

Query: 331 QRLRQESPAXRSET 372
            RL+    + R+ T
Sbjct: 115 LRLQGRMNSARTNT 128


>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 521

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 351 SSXALGDANGKAKEALEQSRQNIERTAEE 437
           SS   G  NG+AKE  E+ R   ++T E+
Sbjct: 468 SSAKQGKGNGRAKETPEEKRARKKKTKED 496


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 22.2 bits (45), Expect(2) = 9.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 831 PXXPXPPPXPP 863
           P  P PPP PP
Sbjct: 6   PGNPPPPPPPP 16



 Score = 21.4 bits (43), Expect(2) = 9.1
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +3

Query: 846 PPPXPPXXXXXPP 884
           PPP PP     PP
Sbjct: 9   PPPPPPPPGFEPP 21


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,113,960
Number of Sequences: 5004
Number of extensions: 31373
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)