Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_E24
         (1052 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr...    31   0.21 
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ...    29   1.1  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    27   3.3  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    27   5.8  
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su...    26   7.7  

>SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 179

 Score = 31.5 bits (68), Expect = 0.21
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +1

Query: 424 TVTQGTCGFCTLEGNCLFQRFLRFNPKPIYIDMGNRYRRHASDDQEELRQYNE 582
           T T   C  CTL G C+  R  R  P   ++D+  +   HAS+ Q   +Q N+
Sbjct: 103 TPTIPHCSMCTLIGLCIRVRLERCLPPRFHVDVKVKKGTHASESQVN-KQLND 154


>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 448

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 634 VSGTFPILGKYPSESESAHYIAAILLDHPTHVVGNGFPYQYILA 503
           ++G        P   +S+HY+A   L+HPT    NG PY  + +
Sbjct: 351 INGVVLAFTSSPGFVQSSHYVAEYELEHPTFFGHNG-PYTQLFS 393


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 529 RYRRHASDDQEELRQYNEHFLIPRDIF 609
           RY+R AS+  E L +++ HF I   +F
Sbjct: 99  RYKRDASESDELLNEFSNHFGISDPLF 125


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
 Frame = -2

Query: 373 SMDASLFSGLVTL--RTYLRFGSSCTSSIFEGRIGWSAVLGARGTLS 239
           S + SLFS       R   RF        F G++GW  +LG+    S
Sbjct: 347 SSNTSLFSNFTFFLSREVPRFSLEFVIRAFGGKVGWDPILGSGSPFS 393


>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = -3

Query: 240 HLDTAIAVPGQLVALYVLSGAVLAVA*RSAG*TSGTK---PEQRTAPELN 100
           H D  IAVPG L+ +       L  A R  G   G+K   PE  T  E+N
Sbjct: 305 HNDLKIAVPGGLIGVGTTVDPTLCRADRLVGQVLGSKGNLPEVYTELEIN 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,149,755
Number of Sequences: 5004
Number of extensions: 65626
Number of successful extensions: 214
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 553220522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)