Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_E24
         (1052 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g10520.1 68414.m01184 DNA polymerase lambda (POLL) identical ...    31   1.3  
At5g48385.1 68418.m05980 expressed protein                             29   3.9  
At1g67220.1 68414.m07651 zinc finger protein-related similar to ...    29   3.9  
At3g20280.2 68416.m02570 PHD finger family protein contains Pfam...    29   5.1  
At3g20280.1 68416.m02569 PHD finger family protein contains Pfam...    29   5.1  
At4g28590.1 68417.m04089 expressed protein                             28   9.0  

>At1g10520.1 68414.m01184 DNA polymerase lambda (POLL) identical to
           DNA polymerase lambda GI:12053869 from [Arabidopsis
           thaliana]
          Length = 529

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 17/73 (23%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
 Frame = +3

Query: 222 LWLYQG-DNVPRAPSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTVDT 398
           L LYQ  ++   +   A+  +   KID  ++D  ++ + +++  E+  +  + + ++ D 
Sbjct: 86  LMLYQWLEDSLTSGEKANEDLYVLKIDSEEVDKPKKSLPAISGSEDQSSPQKRTRYSPDA 145

Query: 399 GLDQPIESHRNTR 437
           G  + +ESH NT+
Sbjct: 146 GDFKGVESHSNTQ 158


>At5g48385.1 68418.m05980 expressed protein
          Length = 558

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = -3

Query: 462 LEGTKTAGPLCYGGSRSAGQVQYQLYDVNVQWTPRYFLDW*HCE-HTFGLDRAARRRFSK 286
           +E T++   L    S    Q+Q    ++  Q      L W   E H  GL+R+ +RRF +
Sbjct: 1   MEDTRSVASLMDSTSSKIQQLQKAFAELESQRAVTLNLKWKELEEHFHGLERSLKRRFHE 60

Query: 285 EESDGLQY 262
            E    +Y
Sbjct: 61  LEDQEKEY 68


>At1g67220.1 68414.m07651 zinc finger protein-related similar to
           SP|Q09472 E1A-associated protein p300 {Homo sapiens},
           SP|Q92793 CREB-binding protein {Homo sapiens}; contains
           Pfam profiles PF00569: Zinc finger ZZ type, PF00628:
           PHD-finger, PF02135: TAZ zinc finger
          Length = 1357

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = +1

Query: 310 SIQTEGMFAVSPIQKITRRPLNIHIIQLILDLTSRSRATVTQGTCGFCTLEGNCLF--QR 483
           S+Q     AVS +++ T   + +H    I+ L   S  +  +G C     E +C      
Sbjct: 596 SLQKRSKRAVSLVERFTEEEIKLH----IMSLKKPSTQSAVEGMCDLKEEEESCQLCDDG 651

Query: 484 FLRFNPKPIY 513
            L F P+P+Y
Sbjct: 652 TLLFPPQPLY 661


>At3g20280.2 68416.m02570 PHD finger family protein contains Pfam
           profile: PF00628 PHD-finger
          Length = 482

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 20/70 (28%), Positives = 31/70 (44%)
 Frame = +3

Query: 213 QEPLWLYQGDNVPRAPSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTV 392
           Q P     GD    A  TADH IL + I        + +  +VT+  N++ ++ HS    
Sbjct: 275 QAPTVTQNGDGSSTASGTADHSILNADI------TTQVHTLTVTSSSNSQQAVSHSEVAK 328

Query: 393 DTGLDQPIES 422
            T    P+E+
Sbjct: 329 ATEDAAPLEN 338


>At3g20280.1 68416.m02569 PHD finger family protein contains Pfam
           profile: PF00628 PHD-finger
          Length = 743

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 20/70 (28%), Positives = 31/70 (44%)
 Frame = +3

Query: 213 QEPLWLYQGDNVPRAPSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTV 392
           Q P     GD    A  TADH IL + I        + +  +VT+  N++ ++ HS    
Sbjct: 536 QAPTVTQNGDGSSTASGTADHSILNADI------TTQVHTLTVTSSSNSQQAVSHSEVAK 589

Query: 393 DTGLDQPIES 422
            T    P+E+
Sbjct: 590 ATEDAAPLEN 599


>At4g28590.1 68417.m04089 expressed protein 
          Length = 331

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +1

Query: 460 EGNCLFQRFLRFNPKPIYIDMGNRYRRHASDDQEELRQ 573
           E NCL      F+P P+ + +  RY+R ASD+ + L++
Sbjct: 206 EINCLEWESFAFHPSPLVVLVFERYKR-ASDNWKTLKE 242


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,478,784
Number of Sequences: 28952
Number of extensions: 350188
Number of successful extensions: 918
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 12,070,560
effective HSP length: 82
effective length of database: 9,696,496
effective search space used: 2598660928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)