Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_E21
         (902 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33985.1 68417.m04822 expressed protein                             29   5.6  
At4g19940.1 68417.m02921 F-box family protein contains Pfam PF00...    28   9.7  

>At4g33985.1 68417.m04822 expressed protein
          Length = 154

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 143 HEMRSRA*AEETWLRRKSHEELGMSGRAR 229
           H     A  EE WLR+K  + LG  GR++
Sbjct: 19  HSWSPDADREEAWLRKKGKQSLGRLGRSK 47


>At4g19940.1 68417.m02921 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
           protein interaction domain;similar to F-box protein Fbx8
           (GI:6164735) [Homo
           sapiens]|8737673|gb|AV566223.1|AV566223
          Length = 411

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = -2

Query: 268 LRFVFVLDVSRLLSCSTRHTQFLMRFSSKP---CFLSSCTRPHLVNVLASRTNAEDN 107
           +RF  V  +   L CS   T  L++ SS P     LSS    HL  VL S ++  D+
Sbjct: 53  MRFKSVSKLWSSLICSRNFTNRLLKLSSPPRLFMCLSSSDNSHLKTVLLSLSSPPDS 109


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,484,576
Number of Sequences: 28952
Number of extensions: 220628
Number of successful extensions: 610
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2129873112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)