Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_E20
         (926 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...   123   3e-29
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...   123   3e-29

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  123 bits (297), Expect = 3e-29
 Identities = 59/109 (54%), Positives = 72/109 (66%)
 Frame = +1

Query: 67  QTEKAFQKXAXVFLNRXGGXKXXXXRHHKXVGLGFKTPREAXEGXYIDKXCPFTGXVSIR 246
           Q+E+AFQK   +F N     K    R +K VGLGFKTP EA  G Y+DK CPF G VSIR
Sbjct: 8   QSERAFQKQPHIFQN---AKKGAGRRWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIR 64

Query: 247 GRILTGVVQKXXXXXXIVIRRDYLHYLPKYNRFEKRXXXMSVXLSPCFR 393
           GRILTG V        I+IRR+YLH++PKYNR+EKR   ++  +SP FR
Sbjct: 65  GRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR 113



 Score = 42.7 bits (96), Expect = 7e-05
 Identities = 18/26 (69%), Positives = 21/26 (80%)
 Frame = +2

Query: 398 VEXGXXVTXGECRPLSKTVRFNVLKV 475
           +  G  VT G+CRPLSKTVRFNVL+V
Sbjct: 114 INEGDVVTVGQCRPLSKTVRFNVLRV 139


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  123 bits (297), Expect = 3e-29
 Identities = 59/109 (54%), Positives = 72/109 (66%)
 Frame = +1

Query: 67  QTEKAFQKXAXVFLNRXGGXKXXXXRHHKXVGLGFKTPREAXEGXYIDKXCPFTGXVSIR 246
           Q+E+AFQK   +F N     K    R +K VGLGFKTP EA  G Y+DK CPF G VSIR
Sbjct: 8   QSERAFQKQPHIFQN---AKKGAGRRWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIR 64

Query: 247 GRILTGVVQKXXXXXXIVIRRDYLHYLPKYNRFEKRXXXMSVXLSPCFR 393
           GRILTG V        I+IRR+YLH++PKYNR+EKR   ++  +SP FR
Sbjct: 65  GRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR 113



 Score = 42.7 bits (96), Expect = 7e-05
 Identities = 18/26 (69%), Positives = 21/26 (80%)
 Frame = +2

Query: 398 VEXGXXVTXGECRPLSKTVRFNVLKV 475
           +  G  VT G+CRPLSKTVRFNVL+V
Sbjct: 114 INEGDVVTVGQCRPLSKTVRFNVLRV 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,822,568
Number of Sequences: 5004
Number of extensions: 19407
Number of successful extensions: 35
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)