Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_E20
         (926 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)             123   2e-28
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)                  31   1.3  
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score =  123 bits (296), Expect = 2e-28
 Identities = 67/127 (52%), Positives = 78/127 (61%), Gaps = 16/127 (12%)
 Frame = +1

Query: 61  ADQTEKAFQKXAXVFLNRXGGX----KXXXXRHHKXVGLGFKTP------------REAX 192
           A+QTE+A+QK A +F NR        K    R  + VGLGFKTP            REA 
Sbjct: 2   AEQTERAYQKQAPIFQNRKRVLGQVTKKKDLRFVRNVGLGFKTPKDVCNCTYLLPEREAI 61

Query: 193 EGXYIDKXCPFTGXVSIRGRILTGVVQKXXXXXXIVIRRDYLHYLPKYNRFEKRXXXMSV 372
           EG YIDK CPFTG VSIRGRILTG+ +       I+IRRDYLHY+ KYNRFEKR   ++ 
Sbjct: 62  EGTYIDKKCPFTGNVSIRGRILTGICRSMKMKRTIIIRRDYLHYIKKYNRFEKRHKNLAA 121

Query: 373 XLSPCFR 393
             SPCFR
Sbjct: 122 HCSPCFR 128



 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 18/26 (69%), Positives = 21/26 (80%)
 Frame = +2

Query: 398 VEXGXXVTXGECRPLSKTVRFNVLKV 475
           +  G  +T G+CRPLSKTVRFNVLKV
Sbjct: 130 IALGDLITVGQCRPLSKTVRFNVLKV 155


>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
          Length = 457

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 18/68 (26%), Positives = 18/68 (26%)
 Frame = +2

Query: 719 PPXXPXXXXXPPXXXPXXTPXPPXXXPXFXXXXGXXGPXXGXXXXXXXXXPXXPXXPXPX 898
           PP  P     PP   P   P PP   P          P            P  P  P P 
Sbjct: 365 PPPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPP 424

Query: 899 XXFXXPPP 922
                PPP
Sbjct: 425 PPPPPPPP 432



 Score = 30.3 bits (65), Expect = 2.3
 Identities = 19/69 (27%), Positives = 20/69 (28%)
 Frame = +2

Query: 719 PPXXPXXXXXPPXXXPXXTPXPPXXXPXFXXXXGXXGPXXGXXXXXXXXXPXXPXXPXPX 898
           PP  P     PP   P  +P PP   P          P            P  P  P P 
Sbjct: 370 PPPPPPPSPPPPPPPPPPSPPPPPQPPP------PPPPPPPPPPPPPPPPPPPPPAPPPP 423

Query: 899 XXFXXPPPP 925
                PPPP
Sbjct: 424 PPPPPPPPP 432


>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 19/69 (27%), Positives = 20/69 (28%)
 Frame = +2

Query: 719 PPXXPXXXXXPPXXXPXXTPXPPXXXPXFXXXXGXXGPXXGXXXXXXXXXPXXPXXPXPX 898
           PP  P     PP   P   P PP   P          P            P  P  P P 
Sbjct: 154 PPYPPPLYPPPPNPPPPNAPYPPPPYP-----PPPNPPYPPPPNPPYPPPPNAPNPPPPN 208

Query: 899 XXFXXPPPP 925
             +  PPPP
Sbjct: 209 PPY--PPPP 215


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,766,425
Number of Sequences: 59808
Number of extensions: 165482
Number of successful extensions: 544
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2693287426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)