Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_E20
(926 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo... 123 2e-28
At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A) 122 3e-28
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C) 118 6e-27
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex... 36 0.038
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 34 0.15
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex... 29 5.8
At3g50580.1 68416.m05532 proline-rich family protein contains pr... 28 7.6
>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
Length = 159
Score = 123 bits (296), Expect = 2e-28
Identities = 61/118 (51%), Positives = 74/118 (62%), Gaps = 5/118 (4%)
Frame = +1
Query: 61 ADQTEKAFQKXAXVFLNRXGGXKXXXX-----RHHKXVGLGFKTPREAXEGXYIDKXCPF 225
A+QTEKAF K VFL+ K R K +GLGFKTPREA EG YID+ CPF
Sbjct: 2 AEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCPF 61
Query: 226 TGXVSIRGRILTGVVQKXXXXXXIVIRRDYLHYLPKYNRFEKRXXXMSVXLSPCFRXR 399
TG VSIRGRIL+G I++RRDYLH++ KY R+EKR + +SPCFR +
Sbjct: 62 TGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFRVK 119
Score = 44.8 bits (101), Expect = 8e-05
Identities = 20/26 (76%), Positives = 22/26 (84%)
Frame = +2
Query: 398 VEXGXXVTXGECRPLSKTVRFNVLKV 475
V+ G VT G+CRPLSKTVRFNVLKV
Sbjct: 118 VKEGDRVTIGQCRPLSKTVRFNVLKV 143
>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
Length = 160
Score = 122 bits (295), Expect = 3e-28
Identities = 60/118 (50%), Positives = 73/118 (61%), Gaps = 5/118 (4%)
Frame = +1
Query: 61 ADQTEKAFQKXAXVFLNRXGGXKXXXX-----RHHKXVGLGFKTPREAXEGXYIDKXCPF 225
A+QTEKAF K VFL+ K R K +GLGFKTPREA +G Y+DK CPF
Sbjct: 2 AEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCPF 61
Query: 226 TGXVSIRGRILTGVVQKXXXXXXIVIRRDYLHYLPKYNRFEKRXXXMSVXLSPCFRXR 399
TG VSIRGRIL G I++RRDYLH++ KY R+EKR + +SPCFR +
Sbjct: 62 TGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVK 119
Score = 41.9 bits (94), Expect = 6e-04
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = +2
Query: 398 VEXGXXVTXGECRPLSKTVRFNVLKV 475
V+ G + G+CRPLSKTVRFNVLKV
Sbjct: 118 VKEGDHIIIGQCRPLSKTVRFNVLKV 143
>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
Length = 159
Score = 118 bits (284), Expect = 6e-27
Identities = 59/118 (50%), Positives = 72/118 (61%), Gaps = 5/118 (4%)
Frame = +1
Query: 61 ADQTEKAFQKXAXVFLNRXGGXKXXXX-----RHHKXVGLGFKTPREAXEGXYIDKXCPF 225
A+QTEKAF K VFL+ K R K +GLGFKTPREA +G YID CPF
Sbjct: 2 AEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCPF 61
Query: 226 TGXVSIRGRILTGVVQKXXXXXXIVIRRDYLHYLPKYNRFEKRXXXMSVXLSPCFRXR 399
TG VSIRGRIL G I++RR+YLH++ KY R+EKR + +SPCFR +
Sbjct: 62 TGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVK 119
Score = 42.3 bits (95), Expect = 4e-04
Identities = 19/26 (73%), Positives = 21/26 (80%)
Frame = +2
Query: 398 VEXGXXVTXGECRPLSKTVRFNVLKV 475
V+ G V G+CRPLSKTVRFNVLKV
Sbjct: 118 VKEGDHVIIGQCRPLSKTVRFNVLKV 143
>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycsimilar to extensin-like protein [Lycopersicon
esculentum] gi|5917664|gb|AAD55979; contains
leucine-rich repeats, Pfam:PF00560; contains proline
rich extensin domains, INTERPRO:IPR002965
Length = 470
Score = 35.9 bits (79), Expect = 0.038
Identities = 18/69 (26%), Positives = 20/69 (28%)
Frame = +2
Query: 719 PPXXPXXXXXPPXXXPXXTPXPPXXXPXFXXXXGXXGPXXGXXXXXXXXXPXXPXXPXPX 898
PP P PP P P PP P + P P P P
Sbjct: 380 PPPPPPPPPPPPPPPPPPPPPPPPPPPPYVYPSPPPPPPSPPPYVYPPPPPPYVYPPPPS 439
Query: 899 XXFXXPPPP 925
+ PPPP
Sbjct: 440 PPYVYPPPP 448
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 33.9 bits (74), Expect = 0.15
Identities = 19/69 (27%), Positives = 20/69 (28%)
Frame = +2
Query: 719 PPXXPXXXXXPPXXXPXXTPXPPXXXPXFXXXXGXXGPXXGXXXXXXXXXPXXPXXPXPX 898
PP P PP P P PP P P P P P P
Sbjct: 451 PPPPPPPPPPPPVYSPPPPPPPPPPPP---PVYSPPPPSPPPPPPPVYSPPPPPPPPPPP 507
Query: 899 XXFXXPPPP 925
+ PPPP
Sbjct: 508 PVYSPPPPP 516
Score = 32.7 bits (71), Expect = 0.35
Identities = 18/69 (26%), Positives = 19/69 (27%)
Frame = +2
Query: 719 PPXXPXXXXXPPXXXPXXTPXPPXXXPXFXXXXGXXGPXXGXXXXXXXXXPXXPXXPXPX 898
PP PP P +P PP P P P P P P
Sbjct: 432 PPPVYSPPPPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPPP 491
Query: 899 XXFXXPPPP 925
PPPP
Sbjct: 492 PPVYSPPPP 500
Score = 31.9 bits (69), Expect = 0.62
Identities = 18/69 (26%), Positives = 19/69 (27%)
Frame = +2
Query: 719 PPXXPXXXXXPPXXXPXXTPXPPXXXPXFXXXXGXXGPXXGXXXXXXXXXPXXPXXPXPX 898
P P PP P +P PP P P P P P P
Sbjct: 447 PVYSPPPPPPPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPPPPPVYSPPPPPPPPPP 506
Query: 899 XXFXXPPPP 925
PPPP
Sbjct: 507 PPVYSPPPP 515
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/54 (27%), Positives = 15/54 (27%)
Frame = +2
Query: 764 PXXTPXPPXXXPXFXXXXGXXGPXXGXXXXXXXXXPXXPXXPXPXXXFXXPPPP 925
P P PP P F P P P P P PPPP
Sbjct: 404 PPSLPSPPPPAPIFSTPPTLTSPPPPSPPPPVYSPPPPPPPPPPVYSPPPPPPP 457
>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 699
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/68 (25%), Positives = 18/68 (26%)
Frame = +2
Query: 722 PXXPXXXXXPPXXXPXXTPXPPXXXPXFXXXXGXXGPXXGXXXXXXXXXPXXPXXPXPXX 901
P P PP P +P PP P P P P P
Sbjct: 550 PPPPPVYSPPPPPPPVHSPPPPVFSPP-PPVYSPPPPVHSPPPPVHSPPPPAPVHSPPPP 608
Query: 902 XFXXPPPP 925
PPPP
Sbjct: 609 VHSPPPPP 616
>At3g50580.1 68416.m05532 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 265
Score = 28.3 bits (60), Expect = 7.6
Identities = 18/72 (25%), Positives = 19/72 (26%), Gaps = 4/72 (5%)
Frame = +2
Query: 722 PXXPXXXXXPPXXXPXXTPXPPXXXPXFXXXXGXXG----PXXGXXXXXXXXXPXXPXXP 889
P P PP P +P PP P P P P P
Sbjct: 90 PPPPAPKKSPPPPTPKKSPSPPSLTPFVPHPTPKKSPSPPPTPSLPPPAPKKSPSTPSLP 149
Query: 890 XPXXXFXXPPPP 925
P PPPP
Sbjct: 150 PPTPKKSPPPPP 161
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,414,067
Number of Sequences: 28952
Number of extensions: 125307
Number of successful extensions: 482
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2207676696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -