Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_E19
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    29   1.1  
SPAC22H12.01c |mug35|SPAC23G3.13c|sequence orphan|Schizosaccharo...    26   8.0  

>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = +3

Query: 318 IWXXALSSINGYYCL-PAXYSRYGXAMGWISP-HKALLMGEDXPSNAPVTETEVSW 479
           IW  +    N   C  P  YSR+G  + W S   K +L G     N PV E  + W
Sbjct: 502 IWSDSKRKWNTLKCKDPLFYSRWGACLHWSSKLKKGILCGGMNELNEPVREV-LEW 556


>SPAC22H12.01c |mug35|SPAC23G3.13c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/52 (25%), Positives = 21/52 (40%)
 Frame = +2

Query: 383 WXRHGLDLPSQSASHGRRXXIERPRHGDGSILDGVHHVHIRTDRRLHLWHCC 538
           W R+ LD PS       R  ++ P+H      D +    +  ++   LW  C
Sbjct: 151 WDRYDLDQPSNQDVEESRNLVQEPKHRSKK-YDRLGLDELVMEQTASLWKIC 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,414,003
Number of Sequences: 5004
Number of extensions: 37591
Number of successful extensions: 62
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)