Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_E19
         (866 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58744-1|AAB00618.1|  141|Caenorhabditis elegans Hypothetical pr...    33   0.26 
U12965-9|AAA20605.3|  522|Caenorhabditis elegans Hypothetical pr...    33   0.26 
U12965-7|AAY86205.1|  528|Caenorhabditis elegans Hypothetical pr...    31   1.1  

>U58744-1|AAB00618.1|  141|Caenorhabditis elegans Hypothetical
           protein F55F1.2 protein.
          Length = 141

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 340 VLMAIIVCLPXILXMVPPWAGSPLTKRFSWAKTXHRTPPSRRRKY 474
           VL + ++CLP  +   PP +    T   +W    HRT   R  KY
Sbjct: 76  VLFSELICLPFFIARGPPESRDKATANVTWLLINHRTGRHRIEKY 120


>U12965-9|AAA20605.3|  522|Caenorhabditis elegans Hypothetical
           protein F23F12.3 protein.
          Length = 522

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 474 SWMASIMFIFAPIAVFIYGIAADKFGRK 557
           +W+A+I FI A +   +YG   D FGRK
Sbjct: 97  AWIATIQFIGALVGALVYGHLGDHFGRK 124


>U12965-7|AAY86205.1|  528|Caenorhabditis elegans Hypothetical
           protein F23F12.13 protein.
          Length = 528

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 468 EVSWMASIMFIFAPIAVFIYGIAADKFGRK 557
           + +W+A+I FI   I    YG   D FGRK
Sbjct: 95  DAAWVATIQFIGVLIGAITYGHLGDHFGRK 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,992,006
Number of Sequences: 27780
Number of extensions: 239751
Number of successful extensions: 545
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)