Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_E19
         (866 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   1.6  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   3.6  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   6.4  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   8.4  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 357 CLPAXYSRYGXAMGWISPHKALLMGEDXPSNAPVTETEVS 476
           CL A  SR G  +G  +P ++  + E+    +P+T  +V+
Sbjct: 645 CLDASSSRRGSKIGSPTPAESTFIPEERRIYSPITFQDVA 684


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 435 DXPSNAPVTETEVSWMAS-IMFIFAPIAVFI 524
           D P  A V   +V WMA  +MF+FA +  F+
Sbjct: 252 DIPPVAYVKALDV-WMAGCMMFVFAALGEFV 281


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 101 PHXPPRLA*WRVASAQMSNLKE 36
           P  PPRL  W V + ++ ++ E
Sbjct: 14  PAGPPRLLGWNVPAEELIHIPE 35


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 586 IAVRWMIKLISAHPIAL 636
           I   W+I LISA P A+
Sbjct: 162 ILAAWLIALISAIPFAI 178


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,180
Number of Sequences: 438
Number of extensions: 3271
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)