Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_E17
         (924 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0724 - 5415218-5415280,5415398-5415523,5415614-5415710,541...   175   4e-44
05_05_0005 + 21442819-21442916,21443053-21443119,21443226-214432...    30   3.0  
01_05_0743 + 24835349-24836009,24836925-24837068,24837154-248373...    29   3.9  
07_03_0987 - 23155134-23155693,23155781-23157023                       29   5.2  
04_04_0707 - 27435894-27436474,27437707-27438241                       29   6.9  
12_02_0880 + 23965602-23965614,23966150-23966370,23966467-239665...    28   9.1  

>02_01_0724 -
           5415218-5415280,5415398-5415523,5415614-5415710,
           5415797-5415861,5415964-5416026,5416127-5416197,
           5416430-5416489,5416564-5416663,5416863-5416938,
           5417284-5417358,5417451-5417575,5417664-5417722,
           5418031-5418109,5418303-5418533
          Length = 429

 Score =  175 bits (426), Expect = 4e-44
 Identities = 86/185 (46%), Positives = 120/185 (64%), Gaps = 5/185 (2%)
 Frame = +1

Query: 169 MKSFIEYSSDSDFPIENLPYGVFT---SDKNAQKHIGVAIGEWILDLNIISR--LFDGPL 333
           ++SF+E +  S FPI+NLP+GVF    S +       VAIG++ LDL  +S   LF GPL
Sbjct: 9   LRSFVEVAPGSHFPIQNLPFGVFRRRGSPEPEPPRPAVAIGDFALDLAAVSDAGLFHGPL 68

Query: 334 LKSKQNVFKEEKLNAFMALTKPHWIEARETLQKLLDVSSPALQNNAELREKAFVKQTDVQ 513
           L S    F++E LN F+ + +P W EAR TLQK+L    P L++N  L++K  V  +D +
Sbjct: 69  L-SASPCFRQETLNMFLGMGRPAWKEARATLQKILSADEPVLRDNEALKKKCLVPMSDTE 127

Query: 514 MHVPVEVGDYTDFYSSLQHATNVGIMFRGKEAALFENWKHLPVGYHGRSSSIVISGTPIH 693
           M +P+ VGDYTDF+ S+ HA N G +FRG +  +  NW  LPVGYHGR+SS+++SGT I 
Sbjct: 128 MLLPITVGDYTDFFCSVHHARNCGFIFRGPQTPVNPNWFQLPVGYHGRASSVIVSGTDII 187

Query: 694 XPYGK 708
            P G+
Sbjct: 188 RPKGQ 192



 Score = 31.5 bits (68), Expect = 0.98
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +3

Query: 738 PHFGPXRLMDFDLEVGAFVGXPPHTGGK 821
           P+FGP + +DF+LE+ A VG P +  GK
Sbjct: 201 PYFGPSKKLDFELEMAAIVG-PGNELGK 227


>05_05_0005 + 21442819-21442916,21443053-21443119,21443226-21443291,
            21443368-21443414,21443480-21443543,21443627-21443707,
            21443781-21443823,21443912-21443961,21444262-21444343,
            21445045-21445120,21445451-21445558,21445782-21445833,
            21445911-21446570,21446652-21448067
          Length = 969

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 21/58 (36%), Positives = 28/58 (48%)
 Frame = +1

Query: 328  PLLKSKQNVFKEEKLNAFMALTKPHWIEARETLQKLLDVSSPALQNNAELREKAFVKQ 501
            P      N  KEE   A  AL    + +  E L+ LL++S+  L+NN  L E A V Q
Sbjct: 880  PYTSEASNGVKEEASPAKEALDVTSFRQRAEALEGLLELSADLLENN-RLEELAIVLQ 936


>01_05_0743 +
           24835349-24836009,24836925-24837068,24837154-24837306,
           24837627-24837742,24837826-24837993,24838610-24838737,
           24838827-24838926,24839119-24839205
          Length = 518

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +3

Query: 132 HSKNLLCQVVA*NEIFHRILVRFRFSNRKFTVRCVYV**KCSKTHRRGDWRMDFRFEYY 308
           HS NL+ ++    E+F RI+ R  +S R     C  +       H  G +  D + E +
Sbjct: 138 HSVNLIMELCEGGELFDRIIARGHYSERAAAALCREIVAVVHSCHSMGVFHRDLKPENF 196


>07_03_0987 - 23155134-23155693,23155781-23157023
          Length = 600

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -1

Query: 837 GSWGRPFPQCVGGXRQMPPLPGQSPSVXQDRSGAXAPXTGQXXLSI 700
           G  G P P+CV     +    GQSPS   + + +     G   LS+
Sbjct: 197 GLCGLPLPRCVHAYNALGDSVGQSPSAAMEEASSGGSNGGLSKLSV 242


>04_04_0707 - 27435894-27436474,27437707-27438241
          Length = 371

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +1

Query: 238 TSDKNAQK-HIGVAIGEWILDLNIISRLFDGPLLKSKQNVFKEEKLNAFMAL 390
           +S  NA+  H+  +  + +L+  I S  F   L+K  +N  KE+ LNAF  L
Sbjct: 294 SSSPNARDIHLPSSFKDLVLERKI-SDAFSSELVKQSKNSGKEQNLNAFFEL 344


>12_02_0880 +
           23965602-23965614,23966150-23966370,23966467-23966503,
           23966917-23967100,23967263-23967411,23967515-23967745,
           23967850-23968039,23968124-23968433,23968658-23969050
          Length = 575

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +1

Query: 172 KSFIEYSSDSDFPIENLPYGVFTSDKNAQKHIGV-AIGEWILDL-NIISRLF 321
           + F+EY+   ++PI++  +G   S       +G    G+ I++L NIIS+L+
Sbjct: 183 REFMEYTVSMNYPIDSWEFGNELSGSGIGASVGAEQYGKDIIELKNIISQLY 234


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,962,428
Number of Sequences: 37544
Number of extensions: 557388
Number of successful extensions: 1303
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1302
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)