Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_E17
         (924 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)                 34   0.19 
SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_5772| Best HMM Match : rve (HMM E-Value=4.9e-13)                    29   4.0  
SB_28708| Best HMM Match : DapB_C (HMM E-Value=5.2)                    29   5.3  
SB_26781| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08)                   29   7.0  

>SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)
          Length = 1458

 Score = 33.9 bits (74), Expect = 0.19
 Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 5/128 (3%)
 Frame = +1

Query: 214  ENLPYGVFTSDKNAQKHIGV-AIGEWILDLNIISRLFDGPLLKSKQNVFKEEKLNAFMAL 390
            E++P  V+   K   + + V        D+N++   F   + K    +F  +K + +M L
Sbjct: 674  ESIPESVYEQYKKWCEQVPVLGFNSGKYDINMVKEYFVKHMTKQAGEIFAAKKESNYMFL 733

Query: 391  TKPHW--IEARETLQKLLDVSSPALQNNAELREKAFVKQTDVQMHVPVEVG--DYTDFYS 558
            T   +  ++    L   L        NN E ++  F  +          VG  +Y DFYS
Sbjct: 734  TTDRFKFLDVMSYLAPGLSFDKWCKANNCEAQKLVFPYEWLDSYEKLSHVGPVEYKDFYS 793

Query: 559  SLQHATNV 582
            SLQ    V
Sbjct: 794  SLQQKITV 801


>SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3296

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 340  SKQNVFKEEKLNAFMALTKPHWIEARETLQKLLDVSSPALQNNAE 474
            +K  + K   L  F +L K H +EAR  +++ L++ +PA+    E
Sbjct: 1557 AKFAIHKRIVLQVFHSLLKAHAVEARSVVRQALEILTPAMPARME 1601


>SB_5772| Best HMM Match : rve (HMM E-Value=4.9e-13)
          Length = 236

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +3

Query: 210 NRKFTVRCVYV**KCSKTHRRGD-WRMDFRFEYYFTFIRWPATKKQAKCIQGREIKRVYG 386
           NR+ +++  ++    + T  R D W+ D   ++ F  I  P TKK A     +++K+++ 
Sbjct: 26  NRQLSIKPFHINTDTNDTAIRWDKWKKDIERQFRFFGITEPETKKDALIPTRKKLKKMFS 85

Query: 387 T 389
           T
Sbjct: 86  T 86


>SB_28708| Best HMM Match : DapB_C (HMM E-Value=5.2)
          Length = 213

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
 Frame = +1

Query: 370 LNA-FMALTKPHWIEARETLQKLLDVS-SPALQNNAELREKAFVKQTDVQMHVPVEVGDY 543
           LNA + +++    +   E   ++  V+   +L    EL+EK   +   +   +   VG  
Sbjct: 19  LNAEYWSISSKTGVNVVEFFSRMAAVAFEQSLLRGLELQEKRNAESKQIGGQIGTHVGK- 77

Query: 544 TDFYSSLQHATNVGIMFRGKEAALFENWKHLP 639
            D  S    AT   +  RGK+A L E  +HLP
Sbjct: 78  GDVLSVEGSATGRYLASRGKKALLVEQVRHLP 109


>SB_26781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 407 SRQGKLYRNCWTFLVLHC-KTMPSYVKRLS*SRRTYKCTCLLKSEITQTS 553
           +R G+ Y+        HC KT+P   K L   R  Y  +C++K E + T+
Sbjct: 512 NRDGRKYKEAKGIRKWHCVKTLPQQEKVLVRHRTCYYVSCIVKDEDSCTN 561


>SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08)
          Length = 1052

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +2

Query: 773 PGSGGICRXPPTHWGKGLPQDPKTNFGFLXLTTGXP 880
           PG GGI   PP   G G+P  P    G L L +G P
Sbjct: 200 PGPGGIPPPPPPIRG-GVPPPPPMGGGSLALDSGLP 234


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,414,333
Number of Sequences: 59808
Number of extensions: 630515
Number of successful extensions: 1460
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1459
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2681370225
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)